Miyakogusa Predicted Gene

Lj5g3v2289000.1

Related links:

Predicted Sequence Links:

Genome Sequence: Lj3.0_chr5

Full length sequence(34192293 bp) Sequence Cut

Init: Term:
reverse complement

Results of Blast2 searches (The best-hits are tabulated.):

database Accession Score Iden
(%) Posi
(%) Definition

TrEMBL F6HVQ1_VITVI 382 87.9 95.2 (tr|F6HVQ1) Putative uncharacterized protein OS=Vitis vinifera GN=VIT_13s0106g00620 PE=4 SV=1

TAIR_pep AT3G20970.1 363 83.5 91.3 | Symbols: NFU4, ATNFU2 | NFU domain protein 4 | chr3:7348277-7350069 FORWARD LENGTH=283

Medicago Medtr3g073070.1 375 90.9 94.7 | iron-sulfer cluster scaffold protein NFU4 | HC | chr3:32903882-32906295 | 20130731

Soybean Glyma20g38630.1 379 87.4 94.2

LJGI gnl|LJGI|TC68400 1616 99.9 99.9 similar to UniRef100_A7QLI7 Cluster: Chromosome undetermined scaffold_119, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome undetermined scaffold_119, whole genome shotgun sequence - Vitis vinifera (Grape), partial (93%)

A list of protein families, domains and functional sites (searches in InterPro)

Lj5g3v2289000.1 length: 272 aa.

IPR001075 NIF system FeS cluster assembly, NifU, C-terminal

method AccNumber shortName E-value location

Molecular Function GO:0005506 iron ion binding

Biological Process GO:0016226 iron-sulfur cluster assembly

Molecular Function GO:0051536 iron-sulfur cluster binding

BlastProDom PD002830 Q5WMY1_ORYSA_Q5WMY1; 5e-29 195-256

HMMPfam PF01106 NifU 2e-21 187-256

IPR014824 NIF system FeS cluster assembly, NifU-like scaffold, N-terminal

Molecular Function GO:0005506 iron ion binding

Gene3D G3DSA:3.30.1370.70 no description 1.4e-38 70-161

HMMPfam PF08712 Nfu_N 1.5e-31 73-159

HMMSmart SM00932 Scaffold 1.4e-46 73-159

superfamily SSF110836 Hypothetical 1.4e-30 70-161

IPR017065 HIRA-interacting protein 5

Cellular Component GO:0005737 cytoplasm

HMMPIR PIRSF036773 HIRA-interacting 2.9e-132 9-272

no_ID

HMMPanther PTHR11178 IRON-SULFUR 3.5e-113 42-270

Seg seg seg NA 7-15
35-64

superfamily SSF117916 Fe-S 2.1e-27 170-263

Wolf-PSORT

Lj5g3v2289000.1 mito 9, chlo 5

PTS1 (Peroxisome targeting signal type 1)

entry_id prediction score sppta spptna fp profile

Lj5g3v2289000.1

Top Kazusa DNA Research Institute

database	Accession	Score	Iden (%)	Posi (%)	Definition
TrEMBL	F6HVQ1_VITVI	382	87.9	95.2	(tr\|F6HVQ1) Putative uncharacterized protein OS=Vitis vinifera GN=VIT_13s0106g00620 PE=4 SV=1
TAIR_pep	AT3G20970.1	363	83.5	91.3	\| Symbols: NFU4, ATNFU2 \| NFU domain protein 4 \| chr3:7348277-7350069 FORWARD LENGTH=283
Medicago	Medtr3g073070.1	375	90.9	94.7	\| iron-sulfer cluster scaffold protein NFU4 \| HC \| chr3:32903882-32906295 \| 20130731
Soybean	Glyma20g38630.1	379	87.4	94.2
LJGI	gnl\|LJGI\|TC68400	1616	99.9	99.9	similar to UniRef100_A7QLI7 Cluster: Chromosome undetermined scaffold_119, whole genome shotgun sequence; n=1; Vitis vinifera\|Rep: Chromosome undetermined scaffold_119, whole genome shotgun sequence - Vitis vinifera (Grape), partial (93%)

IPR001075	NIF system FeS cluster assembly, NifU, C-terminal
Lj5g3v2289000.1				length: 272 aa.
method	AccNumber	shortName	E-value	location
Molecular Function	GO:0005506	iron ion binding
Biological Process	GO:0016226	iron-sulfur cluster assembly
Molecular Function	GO:0051536	iron-sulfur cluster binding
BlastProDom	PD002830	Q5WMY1_ORYSA_Q5WMY1;	5e-29	195-256
HMMPfam	PF01106	NifU	2e-21	187-256
IPR014824	NIF system FeS cluster assembly, NifU-like scaffold, N-terminal
Molecular Function	GO:0005506	iron ion binding
Gene3D	G3DSA:3.30.1370.70	no description	1.4e-38	70-161
HMMPfam	PF08712	Nfu_N	1.5e-31	73-159
HMMSmart	SM00932	Scaffold	1.4e-46	73-159
superfamily	SSF110836	Hypothetical	1.4e-30	70-161
IPR017065	HIRA-interacting protein 5
Cellular Component	GO:0005737	cytoplasm
HMMPIR	PIRSF036773	HIRA-interacting	2.9e-132	9-272
no_ID
HMMPanther	PTHR11178	IRON-SULFUR	3.5e-113	42-270
Seg	seg	seg	NA	7-15 35-64
superfamily	SSF117916	Fe-S	2.1e-27	170-263