Miyakogusa Predicted Gene
- Lj5g3v2237610.2
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr5
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
B1A9T6_9FABA |
679 |
85.0 |
92.1 |
(tr|B1A9T6) Oleate desaturase OS=Caragana korshinskii GN=FAD2-1A PE=2 SV=1 |
| TAIR_pep |
AT3G12120.2 |
557 |
67.9 |
79.9 |
| Symbols: FAD2 | fatty acid desaturase 2 | chr3:3860592-3861743 REVERSE LENGTH=383 |
| Medicago |
Medtr7g093200.1 |
597 |
73.2 |
85.2 |
| microsomal omega-3 fatty acid desaturase | HC | chr7:37015652-37021227 | 20130731 |
| Soybean |
Glyma20g24530.4 |
674 |
84.7 |
91.6 |
|
| LJGI |
gnl|LJGI|TC73281 |
107 |
79.8 |
79.8 |
similar to UniRef100_A4ZYU3 Cluster: Oleate desaturase; n=1; Caragana korshinskii var. intermedia|Rep: Oleate desaturase - Caragana korshinskii var. intermedia, complete |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj5g3v2237610.2 |
length: 378 aa. |
| IPR005804 |
Fatty acid desaturase, type 1 |
| method |
AccNumber |
shortName |
E-value |
location |
| Biological Process |
GO:0006629 |
lipid metabolic process |
|
|
| HMMPfam |
PF00487 |
FA_desaturase |
1.4e-30 |
79-339 |
| no_ID |
|
| HMMPanther |
PTHR32100 |
FAMILY |
7e-229 |
18-378 |
| HMMPanther |
PTHR32100:SF5 |
SUBFAMILY |
7e-229 |
18-378 |
- Wolf-PSORT
Lj5g3v2237610.2 cyto 4, E.R. 3, pero 3, chlo 2, mito 2, cyto_nucl 2, chlo_mito 2, cyto_plas 2
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj5g3v2237610.2 |
Twilight zone |
-4.461 |
-6.094 |
-0.919 |
1.50% |
2.552
|