Miyakogusa Predicted Gene

Lj5g3v1425430.1

Related links:

Predicted Sequence Links:

Genome Sequence: Lj3.0_chr5

Full length sequence(34192293 bp) Sequence Cut

Init: Term:
reverse complement

Results of Blast2 searches (The best-hits are tabulated.):

database Accession Score Iden
(%) Posi
(%) Definition

TrEMBL I1LBI3_SOYBN 486 80.9 87.2 (tr|I1LBI3) Cysteine synthase OS=Glycine max PE=3 SV=1

TAIR_pep AT3G04940.1 415 67.8 80.2 | Symbols: ATCYSD1, CYSD1 | cysteine synthase D1 | chr3:1365681-1367508 FORWARD LENGTH=324

Medicago Medtr1g081625.1 481 77.9 86.6 | O-acetylserine (thiol) lyase | HC | chr1:36286105-36289258 | 20130731

Soybean Glyma10g30140.5 486 80.9 87.2

LJGI gnl|LJGI|TC60583 1762 99.8 99.8 similar to UniRef100_A3RM06 Cluster: Cysteine synthase; n=1; Glycine max|Rep: Cysteine synthase - Glycine max (Soybean), complete

A list of protein families, domains and functional sites (searches in InterPro)

Lj5g3v1425430.1 length: 299 aa.

IPR001216 Cysteine synthase/cystathionine beta-synthase P-phosphate-binding site

method AccNumber shortName E-value location

Biological Process GO:0006535 cysteine biosynthetic process from serine

PatternScan PS00901 CYS_SYNTHASE NA 37-55

IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily

HMMPfam PF00291 PALP 4e-64 12-298

superfamily SSF53686 Tryptophan 2e-98 5-298

IPR005856 Cysteine synthase K/M

Molecular Function GO:0004124 cysteine synthase activity

Biological Process GO:0006535 cysteine biosynthetic process from serine

HMMTigr TIGR01136 cysKM: 1.8e-122 12-299

IPR005859 Cysteine synthase A

Molecular Function GO:0004124 cysteine synthase activity

Biological Process GO:0006535 cysteine biosynthetic process from serine

HMMTigr TIGR01139 cysK: 3.8e-125 12-299

no_ID

Gene3D G3DSA:3.40.50.1100 no description 8.6e-74 43-140
141-299

HMMPanther PTHR10314 SER/THR 1.2e-167 1-299

HMMPanther PTHR10314:SF8 CYSTEINE 1.2e-167 1-299

Seg seg seg NA 180-193
274-279

Wolf-PSORT

Lj5g3v1425430.1 chlo 4, plas 4, E.R. 3, cyto 1, mito 1, vacu 1

PTS1 (Peroxisome targeting signal type 1)

entry_id prediction score sppta spptna fp profile

Lj5g3v1425430.1

Top Kazusa DNA Research Institute

database	Accession	Score	Iden (%)	Posi (%)	Definition
TrEMBL	I1LBI3_SOYBN	486	80.9	87.2	(tr\|I1LBI3) Cysteine synthase OS=Glycine max PE=3 SV=1
TAIR_pep	AT3G04940.1	415	67.8	80.2	\| Symbols: ATCYSD1, CYSD1 \| cysteine synthase D1 \| chr3:1365681-1367508 FORWARD LENGTH=324
Medicago	Medtr1g081625.1	481	77.9	86.6	\| O-acetylserine (thiol) lyase \| HC \| chr1:36286105-36289258 \| 20130731
Soybean	Glyma10g30140.5	486	80.9	87.2
LJGI	gnl\|LJGI\|TC60583	1762	99.8	99.8	similar to UniRef100_A3RM06 Cluster: Cysteine synthase; n=1; Glycine max\|Rep: Cysteine synthase - Glycine max (Soybean), complete

IPR001216	Cysteine synthase/cystathionine beta-synthase P-phosphate-binding site
Lj5g3v1425430.1				length: 299 aa.
method	AccNumber	shortName	E-value	location
Biological Process	GO:0006535	cysteine biosynthetic process from serine
PatternScan	PS00901	CYS_SYNTHASE	NA	37-55
IPR001926	Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily
HMMPfam	PF00291	PALP	4e-64	12-298
superfamily	SSF53686	Tryptophan	2e-98	5-298
IPR005856	Cysteine synthase K/M
Molecular Function	GO:0004124	cysteine synthase activity
Biological Process	GO:0006535	cysteine biosynthetic process from serine
HMMTigr	TIGR01136	cysKM:	1.8e-122	12-299
IPR005859	Cysteine synthase A
Molecular Function	GO:0004124	cysteine synthase activity
Biological Process	GO:0006535	cysteine biosynthetic process from serine
HMMTigr	TIGR01139	cysK:	3.8e-125	12-299
no_ID
Gene3D	G3DSA:3.40.50.1100	no description	8.6e-74	43-140 141-299
HMMPanther	PTHR10314	SER/THR	1.2e-167	1-299
HMMPanther	PTHR10314:SF8	CYSTEINE	1.2e-167	1-299
Seg	seg	seg	NA	180-193 274-279