Miyakogusa Predicted Gene

Lj5g3v0975430.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr5
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I3T1V6_LOTJA 192 99.0 99.0 (tr|I3T1V6) Uncharacterized protein OS=Lotus japonicus PE=4 SV=1
TAIR_pep AT4G02840.1 184 94.8 97.9 | Symbols: | Small nuclear ribonucleoprotein family protein | chr4:1264726-1266253 FORWARD LENGTH=116
Medicago Medtr1g072370.1 190 98.0 98.0 | small nuclear ribonucleoprotein | HC | chr1:32124771-32120319 | 20130731
Soybean Glyma19g33700.1 187 94.9 98.0  
LJGI gnl|LJGI|TC65253 696 100.0 100.0  
A list of protein families, domains and functional sites (searches in InterPro)
Lj5g3v0975430.1 length: 115 aa.
IPR001163 Ribonucleoprotein LSM domain
method AccNumber shortName E-value location
HMMPfam PF01423 LSM 1.6e-16 6-70
IPR006649 Ribonucleoprotein LSM domain, eukaryotic/archaea-type
HMMSmart SM00651 snRNP 4.6e-17 5-70
IPR010920 Like-Sm (LSM) domain
superfamily SSF50182 Sm-like 2.3e-23 3-113
IPR027141 U6 snRNA-associated Sm-like protein LSm4/Small nuclear ribonucleoprotein Sm D1/D3
HMMPanther PTHR23338 SMALL 1.8e-62 1-115
no_ID  
Gene3D G3DSA:2.30.30.100 no description 8.1e-30 1-81
HMMPanther PTHR23338:SF18 SMALL 1.8e-62 1-115
Seg seg seg NA 99-115
Wolf-PSORT
Lj5g3v0975430.1	cyto 8, chlo 2, nucl 2, mito 2, chlo_mito 2
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj5g3v0975430.1