Miyakogusa Predicted Gene

Lj5g3v0657170.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr5
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I1NAA3_SOYBN 713 67.3 77.7 (tr|I1NAA3) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep AT2G36990.1 494 49.5 64.2 | Symbols: SIGF, SIG6, ATSIG6, SOLDAT8 | RNApolymerase sigma-subunit F | chr2:15537502-15540016 REVERSE LENGTH=547
Medicago Medtr7g101840.1 673 62.7 74.8 | RNA polymerase sigma factor | HC | chr7:41066429-41071150 | 20130731
Soybean Glyma19g36710.1 713 67.3 77.7  
LJGI gnl|LJGI|TC68761 1790 99.9 99.9 similar to UniRef100_A7PT61 Cluster: Chromosome chr8 scaffold_29, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr8 scaffold_29, whole genome shotgun sequence - Vitis vinifera (Grape), complete
A list of protein families, domains and functional sites (searches in InterPro)
Lj5g3v0657170.1 length: 565 aa.
IPR000943 RNA polymerase sigma-70
method AccNumber shortName E-value location
Molecular Function GO:0003677 DNA binding    
Molecular Function GO:0003700 sequence-specific DNA binding transcription factor activity    
Biological Process GO:0006352 DNA-dependent transcription, initiation    
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
Molecular Function GO:0016987 sigma factor activity    
FPrintScan PR00046 SIGMA70FCT 9.3e-24 353-366
377-385
501-513
522-537
537-548
PatternScan PS00715 SIGMA70_1 NA 353-366
PatternScan PS00716 SIGMA70_2 NA 522-548
IPR007624 RNA polymerase sigma-70 region 3
Molecular Function GO:0003677 DNA binding    
Molecular Function GO:0003700 sequence-specific DNA binding transcription factor activity    
Biological Process GO:0006352 DNA-dependent transcription, initiation    
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
Molecular Function GO:0016987 sigma factor activity    
HMMPfam PF04539 Sigma70_r3 5e-13 410-483
IPR007627 RNA polymerase sigma-70 region 2
Molecular Function GO:0003677 DNA binding    
Molecular Function GO:0003700 sequence-specific DNA binding transcription factor activity    
Biological Process GO:0006352 DNA-dependent transcription, initiation    
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
Molecular Function GO:0016987 sigma factor activity    
HMMPfam PF04542 Sigma70_r2 1.5e-19 329-393
IPR007630 RNA polymerase sigma-70 region 4
Molecular Function GO:0003677 DNA binding    
Molecular Function GO:0003700 sequence-specific DNA binding transcription factor activity    
Biological Process GO:0006352 DNA-dependent transcription, initiation    
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
Molecular Function GO:0016987 sigma factor activity    
HMMPfam PF04545 Sigma70_r4 8.6e-20 497-550
IPR011991 Winged helix-turn-helix DNA-binding domain
Gene3D G3DSA:1.10.10.10 no description 2.6e-23 398-451
494-561
IPR013324 RNA polymerase sigma factor, region 3/4
Molecular Function GO:0003677 DNA binding    
Molecular Function GO:0003700 sequence-specific DNA binding transcription factor activity    
Biological Process GO:0006352 DNA-dependent transcription, initiation    
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
Molecular Function GO:0016987 sigma factor activity    
superfamily SSF88659 Sigma3 2e-11 459-563
402-476
IPR013325 RNA polymerase sigma factor, region 2
Molecular Function GO:0003677 DNA binding    
Molecular Function GO:0003700 sequence-specific DNA binding transcription factor activity    
Biological Process GO:0006352 DNA-dependent transcription, initiation    
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
Molecular Function GO:0016987 sigma factor activity    
superfamily SSF88946 Sigma2 8.9e-45 246-399
IPR014284 RNA polymerase sigma-70 like domain
Molecular Function GO:0003677 DNA binding    
Molecular Function GO:0003700 sequence-specific DNA binding transcription factor activity    
Biological Process GO:0006352 DNA-dependent transcription, initiation    
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
Molecular Function GO:0016987 sigma factor activity    
HMMTigr TIGR02937 sigma70-ECF: 1.2e-34 327-552
no_ID  
Gene3D G3DSA:1.10.601.10 no description 9.4e-42 320-394
HMMPanther PTHR30603 RNA 4.8e-108 238-564
Seg seg seg NA 6-18
145-166
206-219
Wolf-PSORT
Lj5g3v0657170.1	nucl 8, chlo 4, cyto_nucl 4, cysk_nucl 4, nucl_plas 4
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj5g3v0657170.1