Miyakogusa Predicted Gene

Lj5g3v0292810.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr5
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL C6SWM0_SOYBN 156 100.0 100.0 (tr|C6SWM0) Putative uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep AT4G30220.1 144 90.8 94.7 | Symbols: RUXF | small nuclear ribonucleoprotein F | chr4:14803100-14804259 REVERSE LENGTH=88
Medicago Medtr4g128050.1 153 97.4 98.7 | small nuclear ribonucleoprotein | HC | chr4:53295698-53293100 | 20130731
Soybean Glyma17g07060.1 156 100.0 100.0  
LJGI gnl|LJGI|TC69363 527 99.6 99.6  
A list of protein families, domains and functional sites (searches in InterPro)
Lj5g3v0292810.1 length: 88 aa.
IPR001163 Ribonucleoprotein LSM domain
method AccNumber shortName E-value location
HMMPfam PF01423 LSM 3.4e-20 11-73
IPR006649 Ribonucleoprotein LSM domain, eukaryotic/archaea-type
HMMSmart SM00651 snRNP 3.8e-25 10-75
IPR010920 Like-Sm (LSM) domain
superfamily SSF50182 Sm-like 2.4e-21 6-78
IPR016487 Small nuclear ribonucleoprotein SmF
Cellular Component GO:0005634 nucleus    
Biological Process GO:0006396 RNA processing    
HMMPIR PIRSF006609 Small 8.3e-57 1-84
no_ID  
Gene3D G3DSA:2.30.30.100 no description 5.4e-33 11-77
HMMPanther PTHR11021 SMALL 1.9e-56 1-84
Seg seg seg NA 77-88
Wolf-PSORT
Lj5g3v0292810.1	cyto 6.5, cyto_nucl 4.83333, chlo 2, nucl 2, extr 2, cysk_nucl 1.83333
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj5g3v0292810.1