Miyakogusa Predicted Gene
- Lj4g3v2785700.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr4
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
I3T1G1_LOTJA |
214 |
100.0 |
100.0 |
(tr|I3T1G1) Uncharacterized protein OS=Lotus japonicus PE=2 SV=1 |
| TAIR_pep |
AT1G20580.1 |
199 |
91.3 |
97.1 |
| Symbols: | Small nuclear ribonucleoprotein family protein | chr1:7128979-7130371 FORWARD LENGTH=131 |
| Medicago |
Medtr8g092200.1 |
210 |
95.1 |
100.0 |
| small nuclear ribonucleoprotein | HC | chr8:38530552-38528326 | 20130731 |
| Soybean |
Glyma08g15260.1 |
212 |
96.1 |
100.0 |
|
| LJGI |
gnl|LJGI|TC62892 |
797 |
100.0 |
100.0 |
similar to UniRef100_A7QPB5 Cluster: Chromosome chr18 scaffold_137, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr18 scaffold_137, whole genome shotgun sequence - Vitis vinifera (Grape), partial (90%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj4g3v2785700.1 |
length: 132 aa. |
| IPR001163 |
Ribonucleoprotein LSM domain |
| method |
AccNumber |
shortName |
E-value |
location |
| HMMPfam |
PF01423 |
LSM |
3.1e-14 |
11-74 |
| IPR006649 |
Ribonucleoprotein LSM domain, eukaryotic/archaea-type |
| HMMSmart |
SM00651 |
snRNP |
1.7e-17 |
10-75 |
| IPR010920 |
Like-Sm (LSM) domain |
| superfamily |
SSF50182 |
Sm-like |
7.6e-26 |
8-132 |
| IPR027141 |
U6 snRNA-associated Sm-like protein LSm4/Small nuclear ribonucleoprotein Sm D1/D3 |
| HMMPanther |
PTHR23338 |
SMALL |
4.3e-59 |
3-128 |
| no_ID |
|
| Gene3D |
G3DSA:2.30.30.100 |
no description |
2.1e-30 |
7-86 |
| Seg |
seg |
seg |
NA |
104-132 |
- Wolf-PSORT
Lj4g3v2785700.1 chlo 8, cyto 3, nucl 1, mito 1, plas 1, nucl_plas 1, mito_plas 1
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj4g3v2785700.1 |
|