Miyakogusa Predicted Gene
- Lj4g3v2692410.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr4
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
G7JSX5_MEDTR |
305 |
48.8 |
62.7 |
(tr|G7JSX5) F-box family protein OS=Medicago truncatula GN=MTR_4g050930 PE=4 SV=1 |
| TAIR_pep |
AT1G78750.1 |
89.7 |
26.5 |
45.4 |
| Symbols: | F-box/RNI-like superfamily protein | chr1:29613122-29614695 REVERSE LENGTH=458 |
| Medicago |
Medtr4g050930.1 |
305 |
48.8 |
62.7 |
| F-box/RNI superfamily protein | HC | chr4:36591608-36584820 | 20130731 |
| Soybean |
Glyma06g10300.1 |
300 |
48.8 |
63.6 |
|
| LJGI |
gnl|LJGI|TC61828 |
83.8 |
93.1 |
93.1 |
similar to UniRef100_A2Q574 Cluster: Cyclin-like F-box; n=1; Medicago truncatula|Rep: Cyclin-like F-box - Medicago truncatula (Barrel medic), partial (6%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj4g3v2692410.1 |
length: 370 aa. |
| IPR001810 |
F-box domain, cyclin-like |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0005515 |
protein binding |
|
|
| HMMPfam |
PF00646 |
F-box |
9.1e-07 |
26-63 |
| ProfileScan |
PS50181 |
FBOX |
8.941 |
24-81 |
| superfamily |
SSF81383 |
F-box |
2.5e-09 |
22-95 |
| no_ID |
|
| Gene3D |
G3DSA:3.80.10.10 |
no description |
9.5e-13 |
22-321 |
| HMMPanther |
PTHR32212 |
FAMILY |
2.5e-21 |
5-332 |
- Wolf-PSORT
Lj4g3v2692410.1 mito 5.5, nucl 5, cyto_mito 3.5, plas 2.5, cyto_nucl 2.5, cysk_nucl 2.5
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj4g3v2692410.1 |
|