Miyakogusa Predicted Gene
- Lj4g3v2295890.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr4
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
I1L257_SOYBN |
477 |
84.6 |
91.9 |
(tr|I1L257) Phytochrome OS=Glycine max PE=3 SV=2 |
| TAIR_pep |
AT4G18130.1 |
291 |
54.1 |
74.3 |
| Symbols: PHYE | phytochrome E | chr4:10042312-10045948 REVERSE LENGTH=1112 |
| Medicago |
Medtr2g049520.1 |
467 |
80.8 |
91.9 |
| phytochrome protein | HC | chr2:21814696-21818763 | 20130731 |
| Soybean |
Glyma09g11600.1 |
477 |
84.6 |
91.9 |
|
| LJGI |
gnl|LJGI|TC82095 |
1635 |
100.0 |
100.0 |
similar to UniRef100_Q2HRN2 Cluster: Bacteriophytochrome; n=1; Medicago truncatula|Rep: Bacteriophytochrome - Medicago truncatula (Barrel medic), partial (24%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj4g3v2295890.1 |
length: 273 aa. |
| IPR003594 |
Histidine kinase-like ATPase, ATP-binding domain |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0005524 |
ATP binding |
|
|
| Gene3D |
G3DSA:3.30.565.10 |
no description |
2e-16 |
96-260 |
| HMMPfam |
PF02518 |
HATPase_c |
3.7e-13 |
143-249 |
| HMMSmart |
SM00387 |
Histidine |
1e-12 |
143-257 |
| superfamily |
SSF55874 |
ATPase |
1.2e-16 |
98-253 |
| IPR003661 |
Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain |
| Molecular Function |
GO:0000155 |
phosphorelay sensor kinase activity |
|
|
| Biological Process |
GO:0007165 |
signal transduction |
|
|
| Cellular Component |
GO:0016020 |
membrane |
|
|
| HMMPfam |
PF00512 |
HisKA |
1.5e-08 |
35-95 |
| HMMSmart |
SM00388 |
His |
6.6e-08 |
31-95 |
| IPR005467 |
Signal transduction histidine kinase, core |
| ProfileScan |
PS50109 |
HIS_KIN |
34.593 |
38-257 |
| no_ID |
|
| HMMPanther |
PTHR24423 |
TWO |
2.4e-13 |
42-246 |
- Wolf-PSORT
Lj4g3v2295890.1 chlo 3, cyto 3, extr 3, nucl 2, chlo_mito 2, cyto_E.R. 2
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj4g3v2295890.1 |
|