Miyakogusa Predicted Gene
- Lj4g3v2215360.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr4
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
I1MS31_SOYBN |
435 |
86.0 |
93.4 |
(tr|I1MS31) Pectinesterase OS=Glycine max PE=3 SV=1 |
| TAIR_pep |
AT2G26450.1 |
319 |
61.7 |
76.5 |
| Symbols: | Plant invertase/pectin methylesterase inhibitor superfamily | chr2:11251279-11253446 FORWARD LENGTH=614 |
| Medicago |
Medtr4g124550.1 |
389 |
76.5 |
87.8 |
| pectinesterase/pectinesterase inhibitor | HC | chr4:51551558-51553704 | 20130731 |
| Soybean |
Glyma17g04960.1 |
435 |
86.0 |
93.4 |
|
| LJGI |
--No_Hits--
|
|
|
|
|
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj4g3v2215360.1 |
length: 234 aa. |
| IPR000070 |
Pectinesterase, catalytic |
| method |
AccNumber |
shortName |
E-value |
location |
| Cellular Component |
GO:0005618 |
cell wall |
|
|
| Molecular Function |
GO:0030599 |
pectinesterase activity |
|
|
| Biological Process |
GO:0042545 |
cell wall modification |
|
|
| HMMPfam |
PF01095 |
Pectinesterase |
9.6e-105 |
5-218 |
| IPR011050 |
Pectin lyase fold/virulence factor |
| superfamily |
SSF51126 |
Pectin |
2.2e-69 |
5-232 |
| IPR012334 |
Pectin lyase fold |
| Gene3D |
G3DSA:2.160.20.10 |
no description |
4.7e-82 |
6-227 |
| IPR018040 |
Pectinesterase, active site |
| PatternScan |
PS00503 |
PECTINESTERASE_2 |
NA |
67-76 |
| no_ID |
|
| HMMPanther |
PTHR31707 |
FAMILY |
4.4e-145 |
6-234 |
| HMMPanther |
PTHR31707:SF0 |
SUBFAMILY |
4.4e-145 |
6-234 |
- Wolf-PSORT
Lj4g3v2215360.1 cyto 9, nucl 2, chlo 1, E.R. 1, pero 1, cysk_nucl 1, nucl_plas 1
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj4g3v2215360.1 |
|