Miyakogusa Predicted Gene

Lj4g3v2140320.1

Related links:

Predicted Sequence Links:

Genome Sequence: Lj3.0_chr4

Full length sequence(42341900 bp) Sequence Cut

Init: Term:
reverse complement

Results of Blast2 searches (The best-hits are tabulated.):

database Accession Score Iden
(%) Posi
(%) Definition

TrEMBL I1MSH4_SOYBN 308 55.7 64.4 (tr|I1MSH4) Uncharacterized protein OS=Glycine max PE=4 SV=1

TAIR_pep AT4G26150.1 86.3 45.9 60.2 | Symbols: CGA1, GATA22, GNL | cytokinin-responsive gata factor 1 | chr4:13253210-13254659 FORWARD LENGTH=352

Medicago Medtr4g126350.1 273 51.7 62.8 | GATA type zinc finger transcription factor family protein | HC | chr4:52564744-52566048 | 20130731

Soybean Glyma17g06290.1 308 55.7 64.4

LJGI gnl|LJGI|TC59253 141 89.9 89.9 similar to UniRef100_Q5HZ36 Cluster: GATA transcription factor 24; n=2; Arabidopsis thaliana|Rep: GATA transcription factor 24 - Arabidopsis thaliana (Mouse-ear cress), partial (17%)

A list of protein families, domains and functional sites (searches in InterPro)

Lj4g3v2140320.1 length: 325 aa.

IPR000679 Zinc finger, GATA-type

method AccNumber shortName E-value location

Molecular Function GO:0003700 sequence-specific DNA binding transcription factor activity

Biological Process GO:0006355 regulation of transcription, DNA-dependent

Molecular Function GO:0008270 zinc ion binding

Molecular Function GO:0043565 sequence-specific DNA binding

HMMPfam PF00320 GATA 1.6e-16 187-220

HMMSmart SM00401 zinc 7.9e-20 181-232

PatternScan PS00344 GATA_ZN_FINGER_1 NA 187-212

ProfileScan PS50114 GATA_ZN_FINGER_2 12.545 181-217

IPR013088 Zinc finger, NHR/GATA-type

Biological Process GO:0006355 regulation of transcription, DNA-dependent

Molecular Function GO:0008270 zinc ion binding

Gene3D G3DSA:3.30.50.10 no description 1.6e-14 185-220

no_ID

HMMPanther PTHR10071 TRANSCRIPTION 8.7e-18 182-247

HMMPanther PTHR10071:SF125SUBFAMILY NOT 8.7e-18 182-247

Seg seg seg NA 37-44
171-182
219-230
244-259

superfamily SSF57716 Glucocorticoid 4.3e-15 176-242

Wolf-PSORT

Lj4g3v2140320.1 nucl 11, chlo 2

PTS1 (Peroxisome targeting signal type 1)

entry_id prediction score sppta spptna fp profile

Lj4g3v2140320.1

Top Kazusa DNA Research Institute

database	Accession	Score	Iden (%)	Posi (%)	Definition
TrEMBL	I1MSH4_SOYBN	308	55.7	64.4	(tr\|I1MSH4) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep	AT4G26150.1	86.3	45.9	60.2	\| Symbols: CGA1, GATA22, GNL \| cytokinin-responsive gata factor 1 \| chr4:13253210-13254659 FORWARD LENGTH=352
Medicago	Medtr4g126350.1	273	51.7	62.8	\| GATA type zinc finger transcription factor family protein \| HC \| chr4:52564744-52566048 \| 20130731
Soybean	Glyma17g06290.1	308	55.7	64.4
LJGI	gnl\|LJGI\|TC59253	141	89.9	89.9	similar to UniRef100_Q5HZ36 Cluster: GATA transcription factor 24; n=2; Arabidopsis thaliana\|Rep: GATA transcription factor 24 - Arabidopsis thaliana (Mouse-ear cress), partial (17%)

IPR000679	Zinc finger, GATA-type
Lj4g3v2140320.1				length: 325 aa.
method	AccNumber	shortName	E-value	location
Molecular Function	GO:0003700	sequence-specific DNA binding transcription factor activity
Biological Process	GO:0006355	regulation of transcription, DNA-dependent
Molecular Function	GO:0008270	zinc ion binding
Molecular Function	GO:0043565	sequence-specific DNA binding
HMMPfam	PF00320	GATA	1.6e-16	187-220
HMMSmart	SM00401	zinc	7.9e-20	181-232
PatternScan	PS00344	GATA_ZN_FINGER_1	NA	187-212
ProfileScan	PS50114	GATA_ZN_FINGER_2	12.545	181-217
IPR013088	Zinc finger, NHR/GATA-type
Biological Process	GO:0006355	regulation of transcription, DNA-dependent
Molecular Function	GO:0008270	zinc ion binding
Gene3D	G3DSA:3.30.50.10	no description	1.6e-14	185-220
no_ID
HMMPanther	PTHR10071	TRANSCRIPTION	8.7e-18	182-247
HMMPanther	PTHR10071:SF125SUBFAMILY	NOT	8.7e-18	182-247
Seg	seg	seg	NA	37-44 171-182 219-230 244-259
superfamily	SSF57716	Glucocorticoid	4.3e-15	176-242