Miyakogusa Predicted Gene

Lj4g3v1989860.1

Related links:

Predicted Sequence Links:

Genome Sequence: Lj3.0_chr4

Full length sequence(42341900 bp) Sequence Cut

Init: Term:
reverse complement

Results of Blast2 searches (The best-hits are tabulated.):

database Accession Score Iden
(%) Posi
(%) Definition

TrEMBL I1MT11_SOYBN 1013 77.9 85.2 (tr|I1MT11) Uncharacterized protein OS=Glycine max PE=4 SV=1

TAIR_pep AT5G57870.2 809 64.1 77.1 | Symbols: eIFiso4G1 | MIF4G domain-containing protein / MA3 domain-containing protein | chr5:23439755-23443433 FORWARD LENGTH=776

Medicago Medtr4g130570.1 965 74.6 81.8 | eukaryotic translation initiation factor iso4G | HC | chr4:54404124-54410540 | 20130731

Soybean Glyma17g08030.1 1013 77.9 85.2

LJGI gnl|LJGI|TC80974 2409 98.9 98.9 similar to UniRef100_A7PFP5 Cluster: Chromosome chr11 scaffold_14, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr11 scaffold_14, whole genome shotgun sequence - Vitis vinifera (Grape), partial (46%)

A list of protein families, domains and functional sites (searches in InterPro)

Lj4g3v1989860.1 length: 666 aa.

IPR003890 MIF4G-like, type 3

method AccNumber shortName E-value location

Molecular Function GO:0003677 DNA binding

Molecular Function GO:0003723 RNA binding

Molecular Function GO:0005515 protein binding

HMMPfam PF02854 MIF4G 1.2e-56 91-317

HMMSmart SM00543 Middle 1.3e-56 91-317

IPR003891 Initiation factor eIF-4 gamma, MA3

HMMPfam PF02847 MA3 9.1e-26 502-613

HMMSmart SM00544 Domain 2.8e-33 501-613

ProfileScan PS51366 MI 24.121 500-622

IPR016021 MIF4-like, type 1/2/3

Biological Process GO:0016070 RNA metabolic process

Gene3D G3DSA:1.25.40.180 no description 2.3e-37 92-334
495-650

IPR016024 Armadillo-type fold

Molecular Function GO:0005488 binding

superfamily SSF48371 ARM 9.1e-42 80-320
493-653

no_ID

Coil coil coiled-coil NA 176-207

HMMPanther PTHR23253 EUKARYOTIC 0 19-659

HMMPanther PTHR23253:SF2 EUKARYOTIC 0 19-659

Seg seg seg NA 204-217
362-386

Wolf-PSORT

Lj4g3v1989860.1 chlo 12, nucl 1, pero 1

PTS1 (Peroxisome targeting signal type 1)

entry_id prediction score sppta spptna fp profile

Lj4g3v1989860.1

Top Kazusa DNA Research Institute

database	Accession	Score	Iden (%)	Posi (%)	Definition
TrEMBL	I1MT11_SOYBN	1013	77.9	85.2	(tr\|I1MT11) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep	AT5G57870.2	809	64.1	77.1	\| Symbols: eIFiso4G1 \| MIF4G domain-containing protein / MA3 domain-containing protein \| chr5:23439755-23443433 FORWARD LENGTH=776
Medicago	Medtr4g130570.1	965	74.6	81.8	\| eukaryotic translation initiation factor iso4G \| HC \| chr4:54404124-54410540 \| 20130731
Soybean	Glyma17g08030.1	1013	77.9	85.2
LJGI	gnl\|LJGI\|TC80974	2409	98.9	98.9	similar to UniRef100_A7PFP5 Cluster: Chromosome chr11 scaffold_14, whole genome shotgun sequence; n=1; Vitis vinifera\|Rep: Chromosome chr11 scaffold_14, whole genome shotgun sequence - Vitis vinifera (Grape), partial (46%)

IPR003890	MIF4G-like, type 3
Lj4g3v1989860.1				length: 666 aa.
method	AccNumber	shortName	E-value	location
Molecular Function	GO:0003677	DNA binding
Molecular Function	GO:0003723	RNA binding
Molecular Function	GO:0005515	protein binding
HMMPfam	PF02854	MIF4G	1.2e-56	91-317
HMMSmart	SM00543	Middle	1.3e-56	91-317
IPR003891	Initiation factor eIF-4 gamma, MA3
HMMPfam	PF02847	MA3	9.1e-26	502-613
HMMSmart	SM00544	Domain	2.8e-33	501-613
ProfileScan	PS51366	MI	24.121	500-622
IPR016021	MIF4-like, type 1/2/3
Biological Process	GO:0016070	RNA metabolic process
Gene3D	G3DSA:1.25.40.180	no description	2.3e-37	92-334 495-650
IPR016024	Armadillo-type fold
Molecular Function	GO:0005488	binding
superfamily	SSF48371	ARM	9.1e-42	80-320 493-653
no_ID
Coil	coil	coiled-coil	NA	176-207
HMMPanther	PTHR23253	EUKARYOTIC	0	19-659
HMMPanther	PTHR23253:SF2	EUKARYOTIC	0	19-659
Seg	seg	seg	NA	204-217 362-386