Miyakogusa Predicted Gene

Lj4g3v1411040.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr4
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I3T4E2_LOTJA 516 85.3 85.3 (tr|I3T4E2) Uncharacterized protein OS=Lotus japonicus PE=2 SV=1
TAIR_pep AT5G50250.1 250 52.0 68.0 | Symbols: CP31B | chloroplast RNA-binding protein 31B | chr5:20452677-20453965 REVERSE LENGTH=289
Medicago Medtr4g104470.1 302 55.1 66.9 | 31 kDa ribonucleoprotein | HC | chr4:43224367-43221650 | 20130731
Soybean Glyma05g02800.1 291 56.7 65.1  
LJGI gnl|LJGI|TC58995 1832 100.0 100.0 similar to UniRef100_A7PLZ2 Cluster: Chromosome chr14 scaffold_21, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr14 scaffold_21, whole genome shotgun sequence - Vitis vinifera (Grape), partial (67%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj4g3v1411040.1 length: 307 aa.
IPR000504 RNA recognition motif domain
method AccNumber shortName E-value location
Molecular Function GO:0003676 nucleic acid binding    
HMMPfam PF00076 RRM_1 8.9e-22 122-191
223-293
HMMSmart SM00360 RNA 6.5e-27 121-194
222-295
ProfileScan PS50102 RRM 19.945 120-198
221-299
IPR012677 Nucleotide-binding, alpha-beta plait
Molecular Function GO:0000166 nucleotide binding    
Gene3D G3DSA:3.30.70.330 no description 2.4e-29 97-202
205-303
no_ID  
HMMPanther PTHR24012 FAMILY 2.3e-92 115-300
HMMPanther PTHR24012:SF161RNA-BINDING PROTEIN, 2.3e-92 115-300
Seg seg seg NA 46-60
77-93
211-222
superfamily SSF54928 RNA-binding 5.6e-48 114-306
Wolf-PSORT
Lj4g3v1411040.1	chlo 12, nucl 1, mito 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj4g3v1411040.1