Miyakogusa Predicted Gene

Lj4g3v0446740.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr4
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I1KQP3_SOYBN 320 87.9 91.3 (tr|I1KQP3) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep AT4G05000.2 288 77.2 88.3 | Symbols: VPS28-1 | Vacuolar protein sorting-associated protein VPS28 family protein | chr4:2563953-2564585 FORWARD LENGTH=210
Medicago Medtr4g090890.1 313 86.5 90.0 | vacuolar protein sorting-associated protein VPS28, putative | HC | chr4:35950016-35952082 | 20130731
Soybean Glyma08g06280.1 320 87.9 91.3  
LJGI gnl|LJGI|TC57837 1035 99.8 99.8 similar to UniRef100_Q9S9T7 Cluster: Vacuolar protein sorting-associated protein 28 homolog 1; n=1; Arabidopsis thaliana|Rep: Vacuolar protein sorting-associated protein 28 homolog 1 - Arabidopsis thaliana (Mouse-ear cress), complete
A list of protein families, domains and functional sites (searches in InterPro)
Lj4g3v0446740.1 length: 175 aa.
IPR007143 Vacuolar protein sorting-associated, VPS28
method AccNumber shortName E-value location
HMMPIR PIRSF017535 ESCRT-1 3.6e-68 1-175
HMMPanther PTHR12937 VACUOLAR 4.2e-77 5-175
HMMPfam PF03997 VPS28 2.6e-60 22-175
IPR017898 Vacuolar protein sorting-associated, VPS28, N-terminal
ProfileScan PS51313 VPS28_N 29.923 1-103
IPR017899 Vacuolar protein sorting-associated, VPS28, C-terminal
ProfileScan PS51310 VPS28_C 30.512 113-175
no_ID  
Seg seg seg NA 105-117
superfamily SSF140111 Endosomal 9.1e-31 5-101
superfamily SSF140427 VPS28 1.2e-17 113-175
Wolf-PSORT
Lj4g3v0446740.1	cyto 6, chlo 3, cyto_E.R. 3, cyto_plas 3
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj4g3v0446740.1