Miyakogusa Predicted Gene
- Lj4g3v0216730.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr4
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
C6SXE6_SOYBN |
226 |
75.7 |
81.6 |
(tr|C6SXE6) Uncharacterized protein OS=Glycine max PE=2 SV=1 |
| TAIR_pep |
AT4G20030.1 |
152 |
54.0 |
70.0 |
| Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr4:10846362-10847246 FORWARD LENGTH=152 |
| Medicago |
Medtr5g071540.1 |
188 |
67.1 |
77.6 |
| RNA-binding (RRM/RBD/RNP motif) family protein | HC | chr5:30368066-30365046 | 20130731 |
| Soybean |
Glyma08g09290.1 |
226 |
75.7 |
81.6 |
|
| LJGI |
--No_Hits--
|
|
|
|
|
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj4g3v0216730.1 |
length: 147 aa. |
| IPR000504 |
RNA recognition motif domain |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0003676 |
nucleic acid binding |
|
|
| HMMPfam |
PF00076 |
RRM_1 |
2.8e-20 |
40-109 |
| HMMSmart |
SM00360 |
RNA |
1.7e-24 |
39-112 |
| ProfileScan |
PS50102 |
RRM |
17.848 |
38-116 |
| IPR012677 |
Nucleotide-binding, alpha-beta plait |
| Molecular Function |
GO:0000166 |
nucleotide binding |
|
|
| Gene3D |
G3DSA:3.30.70.330 |
no description |
1.8e-26 |
34-115 |
| no_ID |
|
| HMMPanther |
PTHR24011 |
FAMILY |
4.6e-21 |
39-117 |
| superfamily |
SSF54928 |
RNA-binding |
1.2e-26 |
1-117 |
- Wolf-PSORT
Lj4g3v0216730.1 chlo 8, mito 3, vacu 2
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj4g3v0216730.1 |
|