Miyakogusa Predicted Gene

Lj3g3v3639920.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr3
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I1LP26_SOYBN 1236 70.8 77.2 (tr|I1LP26) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep AT5G55310.1 851 72.9 82.5 | Symbols: TOP1BETA, TOP1 | DNA topoisomerase 1 beta | chr5:22430389-22434590 REVERSE LENGTH=917
Medicago Medtr0172s0010.1 1063 62.3 68.2 | DNA topoisomerase type I | HC | scaffold0172:9308-1932 | 20130731
Soybean Glyma12g01630.1 1236 70.8 77.2  
LJGI gnl|LJGI|TC80969 1275 98.8 98.8 homologue to UniRef100_O24307 Cluster: Topoisomerase I; n=1; Pisum sativum|Rep: Topoisomerase I - Pisum sativum (Garden pea), partial (27%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj3g3v3639920.1 length: 898 aa.
IPR001631 DNA topoisomerase I
method AccNumber shortName E-value location
Molecular Function GO:0003677 DNA binding    
Molecular Function GO:0003917 DNA topoisomerase type I activity    
Cellular Component GO:0005694 chromosome    
Biological Process GO:0006265 DNA topological change    
FPrintScan PR00416 EUTPISMRASEI 2.3e-46 495-504
611-630
634-648
656-672
714-728
851-862
IPR008336 DNA topoisomerase I, DNA binding, eukaryotic-type
Molecular Function GO:0003677 DNA binding    
Molecular Function GO:0003917 DNA topoisomerase type I activity    
Cellular Component GO:0005694 chromosome    
Biological Process GO:0006265 DNA topological change    
HMMPfam PF02919 Topoisom_I_N 3.9e-100 354-566
superfamily SSF56741 Eukaryotic 1.1e-98 352-568
IPR011010 DNA breaking-rejoining enzyme, catalytic core
Molecular Function GO:0003677 DNA binding    
superfamily SSF56349 DNA 1.1e-86 568-896
IPR013030 DNA topoisomerase I, DNA binding, mixed alpha/beta motif, eukaryotic-type
Molecular Function GO:0003677 DNA binding    
Molecular Function GO:0003917 DNA topoisomerase type I activity    
Cellular Component GO:0005694 chromosome    
Biological Process GO:0006265 DNA topological change    
Gene3D G3DSA:2.170.11.10 no description 1e-60 455-568
IPR013034 DNA topoisomerase I, domain 1
Molecular Function GO:0003917 DNA topoisomerase type I activity    
Gene3D G3DSA:1.10.10.41 no description 2.3e-33 370-454
IPR013499 DNA topoisomerase I, eukaryotic-type
Molecular Function GO:0003677 DNA binding    
Molecular Function GO:0003917 DNA topoisomerase type I activity    
Cellular Component GO:0005694 chromosome    
Biological Process GO:0006265 DNA topological change    
HMMSmart SM00435 DNA 1.9e-265 495-871
IPR013500 DNA topoisomerase I, catalytic core, eukaryotic-type
Molecular Function GO:0003677 DNA binding    
Molecular Function GO:0003918 DNA topoisomerase type II (ATP-hydrolyzing) activity    
Cellular Component GO:0005694 chromosome    
Biological Process GO:0006265 DNA topological change    
HMMPfam PF01028 Topoisom_I 7.2e-86 568-796
IPR014711 DNA topoisomerase I, catalytic core, alpha-helical subdomain, eukaryotic-type
Molecular Function GO:0003677 DNA binding    
Molecular Function GO:0003917 DNA topoisomerase type I activity    
Cellular Component GO:0005694 chromosome    
Biological Process GO:0006265 DNA topological change    
Gene3D G3DSA:3.90.15.10 no description 4.8e-58 569-711
IPR014727 DNA topoisomerase I, catalytic core, alpha/beta subdomain
Molecular Function GO:0003677 DNA binding    
Molecular Function GO:0003917 DNA topoisomerase type I activity    
Cellular Component GO:0005694 chromosome    
Biological Process GO:0006265 DNA topological change    
Gene3D G3DSA:1.10.132.10 no description 6.5e-68 718-898
IPR018521 DNA topoisomerase I, active site
Molecular Function GO:0003677 DNA binding    
Molecular Function GO:0003917 DNA topoisomerase type I activity    
Biological Process GO:0006265 DNA topological change    
PatternScan PS00176 TOPOISOMERASE_I_EUK NA 844-862
IPR025834 Topoisomerase I C-terminal domain
HMMPfam PF14370 Topo_C_assoc 4.3e-35 829-898
no_ID  
Coil coil coiled-coil NA 445-473
767-802
818-846
HMMPanther PTHR10290 DNA 0 59-898
HMMPanther PTHR10290:SF0 DNA 0 59-898
Seg seg seg NA 139-147
168-183
277-284
294-317
321-344
445-474
800-814
Wolf-PSORT
Lj3g3v3639920.1	nucl 14
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj3g3v3639920.1