Miyakogusa Predicted Gene
- Lj3g3v3579320.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr3
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
I1LIM7_SOYBN |
729 |
78.3 |
85.3 |
(tr|I1LIM7) Uncharacterized protein OS=Glycine max PE=4 SV=1 |
| TAIR_pep |
AT1G50420.1 |
619 |
65.8 |
78.6 |
| Symbols: SCL3, SCL-3 | scarecrow-like 3 | chr1:18678177-18679625 REVERSE LENGTH=482 |
| Medicago |
Medtr5g009080.1 |
728 |
76.8 |
83.8 |
| GRAS family transcription factor | HC | chr5:2087595-2085054 | 20130731 |
| Soybean |
Glyma11g10170.2 |
729 |
78.3 |
85.3 |
|
| LJGI |
gnl|LJGI|TC77925 |
747 |
97.7 |
97.7 |
similar to UniRef100_A7PFX5 Cluster: Chromosome chr6 scaffold_15, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr6 scaffold_15, whole genome shotgun sequence - Vitis vinifera (Grape), partial (24%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj3g3v3579320.1 |
length: 445 aa. |
| IPR005202 |
Transcription factor GRAS |
| method |
AccNumber |
shortName |
E-value |
location |
| HMMPfam |
PF03514 |
GRAS |
1.3e-139 |
39-442 |
| ProfileScan |
PS50985 |
GRAS |
58.928 |
13-422 |
| no_ID |
|
| HMMPanther |
PTHR31636 |
FAMILY |
5.2e-147 |
22-445 |
| Seg |
seg |
seg |
NA |
271-294 |
- Wolf-PSORT
Lj3g3v3579320.1 chlo 9, cyto 2, nucl 1, extr 1, vacu 1, cyto_pero 1, cyto_E.R. 1, cyto_plas 1
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj3g3v3579320.1 |
|