Miyakogusa Predicted Gene

Lj3g3v2812190.1

Related links:

Predicted Sequence Links:

Genome Sequence: Lj3.0_chr3

Full length sequence(45610869 bp) Sequence Cut

Init: Term:
reverse complement

Results of Blast2 searches (The best-hits are tabulated.):

database Accession Score Iden
(%) Posi
(%) Definition

TrEMBL I1JI32_SOYBN 824 84.4 93.4 (tr|I1JI32) Uncharacterized protein OS=Glycine max PE=4 SV=1

TAIR_pep AT4G28450.1 758 77.3 87.7 | Symbols: | nucleotide binding;protein binding | chr4:14061724-14064582 REVERSE LENGTH=452

Medicago Medtr1g022960.1 788 82.8 91.9 | nucleotide-binding; protein-binding protein | HC | chr1:7263616-7257247 | 20130731

Soybean Glyma02g41900.1 824 84.4 93.4

LJGI gnl|LJGI|TC61687 2633 99.3 99.3 similar to UniRef100_Q93VK1 Cluster: AT4g28450/F20O9_130; n=1; Arabidopsis thaliana|Rep: AT4g28450/F20O9_130 - Arabidopsis thaliana (Mouse-ear cress), complete

A list of protein families, domains and functional sites (searches in InterPro)

Lj3g3v2812190.1 length: 454 aa.

IPR001680 WD40 repeat

method AccNumber shortName E-value location

Molecular Function GO:0005515 protein binding

HMMPfam PF00400 WD40 1.9e-06 62-95
102-137
283-318
337-362

HMMSmart SM00320 WD40 7.3e-05 55-95
98-137
192-234
237-276
280-319
321-362

ProfileScan PS50082 WD_REPEATS_2 11.778 62-104
105-146
287-318
330-371

IPR007287 Sof1-like protein

HMMPfam PF04158 Sof1 3e-27 363-450

IPR015943 WD40/YVTN repeat-like-containing domain

Molecular Function GO:0005515 protein binding

Gene3D G3DSA:2.130.10.10 no description 7.7e-54 33-363

IPR017986 WD40-repeat-containing domain

Molecular Function GO:0005515 protein binding

ProfileScan PS50294 WD_REPEATS_REGION 30.268 62-371

superfamily SSF50978 WD40 9.8e-60 11-362

IPR019775 WD40 repeat, conserved site

PatternScan PS00678 WD_REPEATS_1 NA 82-96
124-138

IPR020472 G-protein beta WD-40 repeat

FPrintScan PR00320 GPROTEINBRPT 1.3e-06 82-96
124-138
349-363

no_ID

HMMPanther PTHR22851 U3 1.2e-256 1-454

HMMPanther PTHR22851:SF0 SUBFAMILY 1.2e-256 1-454

Wolf-PSORT

Lj3g3v2812190.1 cyto 6, nucl 5, chlo 2

PTS1 (Peroxisome targeting signal type 1)

entry_id prediction score sppta spptna fp profile

Lj3g3v2812190.1

Top Kazusa DNA Research Institute

database	Accession	Score	Iden (%)	Posi (%)	Definition
TrEMBL	I1JI32_SOYBN	824	84.4	93.4	(tr\|I1JI32) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep	AT4G28450.1	758	77.3	87.7	\| Symbols: \| nucleotide binding;protein binding \| chr4:14061724-14064582 REVERSE LENGTH=452
Medicago	Medtr1g022960.1	788	82.8	91.9	\| nucleotide-binding; protein-binding protein \| HC \| chr1:7263616-7257247 \| 20130731
Soybean	Glyma02g41900.1	824	84.4	93.4
LJGI	gnl\|LJGI\|TC61687	2633	99.3	99.3	similar to UniRef100_Q93VK1 Cluster: AT4g28450/F20O9_130; n=1; Arabidopsis thaliana\|Rep: AT4g28450/F20O9_130 - Arabidopsis thaliana (Mouse-ear cress), complete

IPR001680	WD40 repeat
Lj3g3v2812190.1				length: 454 aa.
method	AccNumber	shortName	E-value	location
Molecular Function	GO:0005515	protein binding
HMMPfam	PF00400	WD40	1.9e-06	62-95 102-137 283-318 337-362
HMMSmart	SM00320	WD40	7.3e-05	55-95 98-137 192-234 237-276 280-319 321-362
ProfileScan	PS50082	WD_REPEATS_2	11.778	62-104 105-146 287-318 330-371
IPR007287	Sof1-like protein
HMMPfam	PF04158	Sof1	3e-27	363-450
IPR015943	WD40/YVTN repeat-like-containing domain
Molecular Function	GO:0005515	protein binding
Gene3D	G3DSA:2.130.10.10	no description	7.7e-54	33-363
IPR017986	WD40-repeat-containing domain
Molecular Function	GO:0005515	protein binding
ProfileScan	PS50294	WD_REPEATS_REGION	30.268	62-371
superfamily	SSF50978	WD40	9.8e-60	11-362
IPR019775	WD40 repeat, conserved site
PatternScan	PS00678	WD_REPEATS_1	NA	82-96 124-138
IPR020472	G-protein beta WD-40 repeat
FPrintScan	PR00320	GPROTEINBRPT	1.3e-06	82-96 124-138 349-363
no_ID
HMMPanther	PTHR22851	U3	1.2e-256	1-454
HMMPanther	PTHR22851:SF0	SUBFAMILY	1.2e-256	1-454