Miyakogusa Predicted Gene

Lj3g3v2809290.1

Related links:

Predicted Sequence Links:

Genome Sequence: Lj3.0_chr3

Full length sequence(45610869 bp) Sequence Cut

Init: Term:
reverse complement

Results of Blast2 searches (The best-hits are tabulated.):

database Accession Score Iden
(%) Posi
(%) Definition

TrEMBL K7LW29_SOYBN 1107 75.0 83.7 (tr|K7LW29) Uncharacterized protein OS=Glycine max PE=4 SV=1

TAIR_pep AT4G03560.1 920 60.4 75.9 | Symbols: ATTPC1, TPC1, ATCCH1, FOU2 | two-pore channel 1 | chr4:1580253-1585691 FORWARD LENGTH=733

Medicago Medtr2g090380.3 1137 75.7 84.3 | two pore calcium channel protein, putative | HC | chr2:38491838-38513914 | 20130731

Soybean Glyma13g37280.1 1030 73.0 80.9

LJGI gnl|LJGI|TC80457 1965 99.9 99.9 similar to UniRef100_Q948T1 Cluster: Two-pore calcium channel; n=1; Arabidopsis thaliana|Rep: Two-pore calcium channel - Arabidopsis thaliana (Mouse-ear cress), partial (41%)

A list of protein families, domains and functional sites (searches in InterPro)

Lj3g3v2809290.1 length: 737 aa.

IPR002048 EF-hand domain

method AccNumber shortName E-value location

Molecular Function GO:0005509 calcium ion binding

ProfileScan PS50222 EF_HAND_2 9.353 325-360
366-401

IPR005821 Ion transport domain

Molecular Function GO:0005216 ion channel activity

Biological Process GO:0006811 ion transport

Cellular Component GO:0016020 membrane

Biological Process GO:0055085 transmembrane transport

HMMPfam PF00520 Ion_trans 1.6e-31 138-307
469-674

IPR011992 EF-hand-like domain

Molecular Function GO:0005509 calcium ion binding

Gene3D G3DSA:1.10.238.10 no description 9.6e-09 320-405

HMMPfam PF13499 EF_hand_5 2.7e-07 330-394

IPR027359 Voltage-dependent potassium channel, four helix bundle domain

Gene3D G3DSA:1.20.120.350 no description 1.1e-08 431-547

no_ID

HMMPanther PTHR10037 VOLTAGE-GATED 2.2e-248 124-685

HMMPanther PTHR10037:SF61 TWO 2.2e-248 124-685

Seg seg seg NA 369-380
504-516
534-548
660-671

superfamily SSF47473 EF-hand 9e-11 320-418

superfamily SSF81324 Voltage-gated 0.00022 364-706
69-327

Wolf-PSORT

Lj3g3v2809290.1 plas 12, vacu 1, E.R. 1, E.R._vacu 1

PTS1 (Peroxisome targeting signal type 1)

entry_id prediction score sppta spptna fp profile

Lj3g3v2809290.1

Top Kazusa DNA Research Institute

database	Accession	Score	Iden (%)	Posi (%)	Definition
TrEMBL	K7LW29_SOYBN	1107	75.0	83.7	(tr\|K7LW29) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep	AT4G03560.1	920	60.4	75.9	\| Symbols: ATTPC1, TPC1, ATCCH1, FOU2 \| two-pore channel 1 \| chr4:1580253-1585691 FORWARD LENGTH=733
Medicago	Medtr2g090380.3	1137	75.7	84.3	\| two pore calcium channel protein, putative \| HC \| chr2:38491838-38513914 \| 20130731
Soybean	Glyma13g37280.1	1030	73.0	80.9
LJGI	gnl\|LJGI\|TC80457	1965	99.9	99.9	similar to UniRef100_Q948T1 Cluster: Two-pore calcium channel; n=1; Arabidopsis thaliana\|Rep: Two-pore calcium channel - Arabidopsis thaliana (Mouse-ear cress), partial (41%)

IPR002048	EF-hand domain
Lj3g3v2809290.1				length: 737 aa.
method	AccNumber	shortName	E-value	location
Molecular Function	GO:0005509	calcium ion binding
ProfileScan	PS50222	EF_HAND_2	9.353	325-360 366-401
IPR005821	Ion transport domain
Molecular Function	GO:0005216	ion channel activity
Biological Process	GO:0006811	ion transport
Cellular Component	GO:0016020	membrane
Biological Process	GO:0055085	transmembrane transport
HMMPfam	PF00520	Ion_trans	1.6e-31	138-307 469-674
IPR011992	EF-hand-like domain
Molecular Function	GO:0005509	calcium ion binding
Gene3D	G3DSA:1.10.238.10	no description	9.6e-09	320-405
HMMPfam	PF13499	EF_hand_5	2.7e-07	330-394
IPR027359	Voltage-dependent potassium channel, four helix bundle domain
Gene3D	G3DSA:1.20.120.350	no description	1.1e-08	431-547
no_ID
HMMPanther	PTHR10037	VOLTAGE-GATED	2.2e-248	124-685
HMMPanther	PTHR10037:SF61	TWO	2.2e-248	124-685
Seg	seg	seg	NA	369-380 504-516 534-548 660-671
superfamily	SSF47473	EF-hand	9e-11	320-418
superfamily	SSF81324	Voltage-gated	0.00022	364-706 69-327