Miyakogusa Predicted Gene

Lj3g3v2309770.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr3
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL G7JRG7_MEDTR 684 64.1 74.4 (tr|G7JRG7) IBR domain containing protein OS=Medicago truncatula GN=MTR_4g060940 PE=4 SV=1
TAIR_pep AT5G60250.1 367 46.4 62.8 | Symbols: | zinc finger (C3HC4-type RING finger) family protein | chr5:24252226-24254710 FORWARD LENGTH=655
Medicago Medtr2g028870.1 153 28.6 45.6 | C6HC-type zinc finger RING/U-box protein | HC | chr2:10740321-10734195 | 20130731
Soybean Glyma11g15820.1 663 65.8 74.7  
LJGI gnl|LJGI|GO034805 1019 98.7 98.7 weakly similar to UniRef100_A7NZE4 Cluster: Chromosome chr6 scaffold_3, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr6 scaffold_3, whole genome shotgun sequence - Vitis vinifera (Grape), partial (4%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj3g3v2309770.1 length: 552 aa.
IPR001841 Zinc finger, RING-type
method AccNumber shortName E-value location
Molecular Function GO:0005515 protein binding    
Molecular Function GO:0008270 zinc ion binding    
ProfileScan PS50089 ZF_RING_2 9.494 309-353
IPR002867 Zinc finger, C6HC-type
Molecular Function GO:0008270 zinc ion binding    
HMMPfam PF01485 IBR 1.5e-06 379-447
470-515
HMMSmart SM00647 In 0.02 376-447
460-517
IPR012337 Ribonuclease H-like domain
Molecular Function GO:0003676 nucleic acid binding    
superfamily SSF53098 Ribonuclease 1.3e-06 168-286
IPR013083 Zinc finger, RING/FYVE/PHD-type
Gene3D G3DSA:3.30.40.10 no description 0.00029 306-371
IPR017907 Zinc finger, RING-type, conserved site
PatternScan PS00518 ZF_RING_1 NA 327-336
no_ID  
Coil coil coiled-coil NA 73-111
HMMPanther PTHR11685 ARIADNE 4.7e-137 96-528
HMMPanther PTHR11685:SF48 SUBFAMILY 4.7e-137 96-528
HMMPfam PF13456 RVT_3 2.4e-11 205-288
Seg seg seg NA 44-60
203-214
423-438
522-550
superfamily SSF57850 RING/U-box 9.2e-06 302-391
456-527
375-452
Wolf-PSORT
Lj3g3v2309770.1	nucl 11, cyto 3
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj3g3v2309770.1