Miyakogusa Predicted Gene

Lj3g3v1981190.1

Related links:

Predicted Sequence Links:

Genome Sequence: Lj3.0_chr3

Full length sequence(45610869 bp) Sequence Cut

Init: Term:
reverse complement

Results of Blast2 searches (The best-hits are tabulated.):

database Accession Score Iden
(%) Posi
(%) Definition

TrEMBL K7KYQ4_SOYBN 793 96.3 97.8 (tr|K7KYQ4) Uncharacterized protein OS=Glycine max PE=4 SV=1

TAIR_pep AT4G36690.4 644 78.6 89.1 | Symbols: ATU2AF65A | U2 snRNP auxilliary factor, large subunit, splicing factor | chr4:17294139-17297609 REVERSE LENGTH=551

Medicago Medtr3g005670.1 763 92.0 95.0 | U2 snRNP auxilliary factor, large subunit, splicing factor | HC | chr3:313978-307107 | 20130731

Soybean Glyma06g48230.1 798 96.3 97.8

LJGI gnl|LJGI|TC79958 1679 99.0 99.0 similar to UniRef100_A7PUY1 Cluster: Chromosome chr4 scaffold_32, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr4 scaffold_32, whole genome shotgun sequence - Vitis vinifera (Grape), partial (49%)

A list of protein families, domains and functional sites (searches in InterPro)

Lj3g3v1981190.1 length: 600 aa.

IPR000504 RNA recognition motif domain

method AccNumber shortName E-value location

Molecular Function GO:0003676 nucleic acid binding

HMMPfam PF00076 RRM_1 6.9e-17 390-459

HMMSmart SM00360 RNA 0.052 269-347
389-462
510-591

ProfileScan PS50102 RRM 9.047 268-351
388-466
509-595

IPR006529 U2 snRNP auxilliary factor, large subunit, splicing factor

Molecular Function GO:0003723 RNA binding

Cellular Component GO:0005634 nucleus

Biological Process GO:0006397 mRNA processing

HMMTigr TIGR01642 U2AF_lg: 3.7e-183 81-600

IPR012677 Nucleotide-binding, alpha-beta plait

Molecular Function GO:0000166 nucleotide binding

Gene3D G3DSA:3.30.70.330 no description 1.5e-21 264-348
389-466
502-592

no_ID

HMMPanther PTHR23139 RNA-BINDING 3.1e-218 48-600

HMMPanther PTHR23139:SF9 SPLICING 3.1e-218 48-600

HMMPfam PF13893 RRM_5 2.4e-07 531-593

HMMPfam PF14259 RRM_6 1.9e-10 270-344

Seg seg seg NA 3-11
16-35
44-185
188-199

superfamily SSF54928 RNA-binding 3.3e-18 389-599
146-348

Wolf-PSORT

Lj3g3v1981190.1 nucl 13

PTS1 (Peroxisome targeting signal type 1)

entry_id prediction score sppta spptna fp profile

Lj3g3v1981190.1

Top Kazusa DNA Research Institute

database	Accession	Score	Iden (%)	Posi (%)	Definition
TrEMBL	K7KYQ4_SOYBN	793	96.3	97.8	(tr\|K7KYQ4) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep	AT4G36690.4	644	78.6	89.1	\| Symbols: ATU2AF65A \| U2 snRNP auxilliary factor, large subunit, splicing factor \| chr4:17294139-17297609 REVERSE LENGTH=551
Medicago	Medtr3g005670.1	763	92.0	95.0	\| U2 snRNP auxilliary factor, large subunit, splicing factor \| HC \| chr3:313978-307107 \| 20130731
Soybean	Glyma06g48230.1	798	96.3	97.8
LJGI	gnl\|LJGI\|TC79958	1679	99.0	99.0	similar to UniRef100_A7PUY1 Cluster: Chromosome chr4 scaffold_32, whole genome shotgun sequence; n=1; Vitis vinifera\|Rep: Chromosome chr4 scaffold_32, whole genome shotgun sequence - Vitis vinifera (Grape), partial (49%)

IPR000504	RNA recognition motif domain
Lj3g3v1981190.1				length: 600 aa.
method	AccNumber	shortName	E-value	location
Molecular Function	GO:0003676	nucleic acid binding
HMMPfam	PF00076	RRM_1	6.9e-17	390-459
HMMSmart	SM00360	RNA	0.052	269-347 389-462 510-591
ProfileScan	PS50102	RRM	9.047	268-351 388-466 509-595
IPR006529	U2 snRNP auxilliary factor, large subunit, splicing factor
Molecular Function	GO:0003723	RNA binding
Cellular Component	GO:0005634	nucleus
Biological Process	GO:0006397	mRNA processing
HMMTigr	TIGR01642	U2AF_lg:	3.7e-183	81-600
IPR012677	Nucleotide-binding, alpha-beta plait
Molecular Function	GO:0000166	nucleotide binding
Gene3D	G3DSA:3.30.70.330	no description	1.5e-21	264-348 389-466 502-592
no_ID
HMMPanther	PTHR23139	RNA-BINDING	3.1e-218	48-600
HMMPanther	PTHR23139:SF9	SPLICING	3.1e-218	48-600
HMMPfam	PF13893	RRM_5	2.4e-07	531-593
HMMPfam	PF14259	RRM_6	1.9e-10	270-344
Seg	seg	seg	NA	3-11 16-35 44-185 188-199
superfamily	SSF54928	RNA-binding	3.3e-18	389-599 146-348