Miyakogusa Predicted Gene

Lj3g3v0934460.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr3
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I1N056_SOYBN 625 93.9 97.4 (tr|I1N056) Uncharacterized protein OS=Glycine max PE=4 SV=2
TAIR_pep AT5G56130.1 579 86.7 93.3 | Symbols: TEX1, AtTEX1, THO3 | Transducin/WD40 repeat-like superfamily protein | chr5:22722755-22725065 REVERSE LENGTH=315
Medicago Medtr3g061450.1 618 93.0 96.8 | transducin/WD-like repeat-protein | HC | chr3:24506567-24498548 | 20130731
Soybean Glyma18g07920.1 626 93.9 97.4  
LJGI gnl|LJGI|TC79617 1800 98.8 98.8 similar to UniRef100_A9TTX0 Cluster: Predicted protein; n=1; Physcomitrella patens subsp. patens|Rep: Predicted protein - Physcomitrella patens subsp. patens, partial (93%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj3g3v0934460.1 length: 313 aa.
IPR001680 WD40 repeat
method AccNumber shortName E-value location
Molecular Function GO:0005515 protein binding    
HMMPfam PF00400 WD40 0.0059 13-47
60-94
182-218
224-253
HMMSmart SM00320 WD40 2.1 8-47
54-94
138-176
179-218
221-260
ProfileScan PS50082 WD_REPEATS_2 12.915 15-49
61-103
186-227
IPR015943 WD40/YVTN repeat-like-containing domain
Molecular Function GO:0005515 protein binding    
Gene3D G3DSA:2.130.10.10 no description 1.7e-21 13-192
193-295
IPR017986 WD40-repeat-containing domain
Molecular Function GO:0005515 protein binding    
ProfileScan PS50294 WD_REPEATS_REGION 29.609 15-269
superfamily SSF50978 WD40 1.1e-57 5-296
IPR019775 WD40 repeat, conserved site
PatternScan PS00678 WD_REPEATS_1 NA 81-95
IPR020472 G-protein beta WD-40 repeat
FPrintScan PR00320 GPROTEINBRPT 2.3e-07 34-48
81-95
205-219
no_ID  
HMMPanther PTHR22839 THO 1.5e-111 7-312
Wolf-PSORT
Lj3g3v0934460.1	cyto 8, nucl 3, chlo 1, mito 1, plas 1, chlo_mito 1, mito_plas 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj3g3v0934460.1