Miyakogusa Predicted Gene

Lj3g3v0822530.2

Related links:

Predicted Sequence Links:

Genome Sequence: Lj3.0_chr3

Full length sequence(45610869 bp) Sequence Cut

Init: Term:
reverse complement

Results of Blast2 searches (The best-hits are tabulated.):

database Accession Score Iden
(%) Posi
(%) Definition

TrEMBL K7LSD6_SOYBN 915 68.1 73.1 (tr|K7LSD6) Uncharacterized protein OS=Glycine max PE=4 SV=1

TAIR_pep AT3G51950.2 308 44.4 53.5 | Symbols: | Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein | chr3:19278244-19280407 REVERSE LENGTH=540

Medicago Medtr3g436060.1 818 63.2 69.2 | RNA-binding domain CCCH-type zinc finger protein | HC | chr3:12079943-12084739 | 20130731

Soybean Glyma12g01350.1 912 67.7 72.9

LJGI gnl|LJGI|TC81652 1883 99.2 99.2 similar to UniRef100_Q6T284 Cluster: Predicted protein; n=1; Populus tremula x Populus alba|Rep: Predicted protein - Populus tremula x Populus alba, partial (35%)

A list of protein families, domains and functional sites (searches in InterPro)

Lj3g3v0822530.2 length: 710 aa.

IPR000504 RNA recognition motif domain

method AccNumber shortName E-value location

Molecular Function GO:0003676 nucleic acid binding

HMMSmart SM00360 RNA 2.6e-08 366-436

ProfileScan PS50102 RRM 9.763 365-441

IPR000571 Zinc finger, CCCH-type

Molecular Function GO:0003676 nucleic acid binding

Molecular Function GO:0008270 zinc ion binding

Gene3D G3DSA:4.10.1000.10 no description 2.3e-05 239-263

HMMPfam PF00642 zf-CCCH 1.8e-05 240-260

HMMSmart SM00356 zinc 0.00014 237-261

ProfileScan PS50103 ZF_C3H1 14.380 235-262

IPR012677 Nucleotide-binding, alpha-beta plait

Molecular Function GO:0000166 nucleotide binding

Gene3D G3DSA:3.30.70.330 no description 7.6e-09 375-446

no_ID

HMMPanther PTHR24009 FAMILY 1.6e-224 2-710

HMMPanther PTHR24009:SF0 SUBFAMILY 1.6e-224 2-710

HMMPfam PF14259 RRM_6 1.3e-06 376-427

Seg seg seg NA 67-82
97-113
136-147
192-203
313-336
595-610
650-668

superfamily SSF54928 RNA-binding 3.8e-12 349-451

superfamily SSF90229 CCCH 7.6e-06 233-261

Wolf-PSORT

Lj3g3v0822530.2 nucl 14

PTS1 (Peroxisome targeting signal type 1)

entry_id prediction score sppta spptna fp profile

Lj3g3v0822530.2

Top Kazusa DNA Research Institute

database	Accession	Score	Iden (%)	Posi (%)	Definition
TrEMBL	K7LSD6_SOYBN	915	68.1	73.1	(tr\|K7LSD6) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep	AT3G51950.2	308	44.4	53.5	\| Symbols: \| Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein \| chr3:19278244-19280407 REVERSE LENGTH=540
Medicago	Medtr3g436060.1	818	63.2	69.2	\| RNA-binding domain CCCH-type zinc finger protein \| HC \| chr3:12079943-12084739 \| 20130731
Soybean	Glyma12g01350.1	912	67.7	72.9
LJGI	gnl\|LJGI\|TC81652	1883	99.2	99.2	similar to UniRef100_Q6T284 Cluster: Predicted protein; n=1; Populus tremula x Populus alba\|Rep: Predicted protein - Populus tremula x Populus alba, partial (35%)

IPR000504	RNA recognition motif domain
Lj3g3v0822530.2				length: 710 aa.
method	AccNumber	shortName	E-value	location
Molecular Function	GO:0003676	nucleic acid binding
HMMSmart	SM00360	RNA	2.6e-08	366-436
ProfileScan	PS50102	RRM	9.763	365-441
IPR000571	Zinc finger, CCCH-type
Molecular Function	GO:0003676	nucleic acid binding
Molecular Function	GO:0008270	zinc ion binding
Gene3D	G3DSA:4.10.1000.10	no description	2.3e-05	239-263
HMMPfam	PF00642	zf-CCCH	1.8e-05	240-260
HMMSmart	SM00356	zinc	0.00014	237-261
ProfileScan	PS50103	ZF_C3H1	14.380	235-262
IPR012677	Nucleotide-binding, alpha-beta plait
Molecular Function	GO:0000166	nucleotide binding
Gene3D	G3DSA:3.30.70.330	no description	7.6e-09	375-446
no_ID
HMMPanther	PTHR24009	FAMILY	1.6e-224	2-710
HMMPanther	PTHR24009:SF0	SUBFAMILY	1.6e-224	2-710
HMMPfam	PF14259	RRM_6	1.3e-06	376-427
Seg	seg	seg	NA	67-82 97-113 136-147 192-203 313-336 595-610 650-668
superfamily	SSF54928	RNA-binding	3.8e-12	349-451
superfamily	SSF90229	CCCH	7.6e-06	233-261