Miyakogusa Predicted Gene

Lj3g3v0478010.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr3
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I3SC15_LOTJA 170 100.0 100.0 (tr|I3SC15) Uncharacterized protein OS=Lotus japonicus PE=4 SV=1
TAIR_pep AT2G03870.1 162 95.3 96.5 | Symbols: | Small nuclear ribonucleoprotein family protein | chr2:1180306-1181256 FORWARD LENGTH=99
Medicago Medtr7g065100.1 167 98.8 98.8 | u6 snRNA-associated-like-Smprotein | HC | chr7:23716677-23712044 | 20130731
Soybean Glyma05g28190.1 167 97.7 98.8  
LJGI gnl|LJGI|TC70953 511 100.0 100.0 homologue to UniRef100_A7QWV4 Cluster: Chromosome chr13 scaffold_210, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr13 scaffold_210, whole genome shotgun sequence - Vitis vinifera (Grape), partial (87%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj3g3v0478010.1 length: 86 aa.
IPR001163 Ribonucleoprotein LSM domain
method AccNumber shortName E-value location
HMMPfam PF01423 LSM 3e-19 10-82
IPR006649 Ribonucleoprotein LSM domain, eukaryotic/archaea-type
HMMSmart SM00651 snRNP 7.2e-23 9-82
IPR010920 Like-Sm (LSM) domain
superfamily SSF50182 Sm-like 5.2e-18 11-86
IPR017132 U6 snRNA-associated Sm-like protein LSm7
HMMPIR PIRSF037188 U6 2.9e-50 1-86
no_ID  
Gene3D G3DSA:2.30.30.100 no description 7.3e-24 5-85
HMMPanther PTHR10553 SMALL 1.5e-43 4-86
HMMPanther PTHR10553:SF1 U6 1.5e-43 4-86
Wolf-PSORT
Lj3g3v0478010.1	chlo 3, cyto 3, extr 3, nucl 2, chlo_mito 2, cyto_plas 2
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj3g3v0478010.1