Miyakogusa Predicted Gene

Lj2g3v3339150.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr2
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL G7K4Y5_MEDTR 676 69.3 78.0 (tr|G7K4Y5) Periodic tryptophan protein-like protein OS=Medicago truncatula GN=MTR_5g097870 PE=4 SV=1
TAIR_pep AT4G18905.1 552 58.6 72.6 | Symbols: | Transducin/WD40 repeat-like superfamily protein | chr4:10360234-10362991 FORWARD LENGTH=494
Medicago Medtr5g097870.1 676 69.3 78.0 | transducin/WD-like repeat-protein | HC | chr5:42852575-42844975 | 20130731
Soybean Glyma02g47740.3 671 69.0 79.4  
LJGI gnl|LJGI|TC66761 2926 100.0 100.0 similar to UniRef100_A7QE81 Cluster: Chromosome chr4 scaffold_83, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr4 scaffold_83, whole genome shotgun sequence - Vitis vinifera (Grape), partial (94%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj2g3v3339150.1 length: 491 aa.
IPR001680 WD40 repeat
method AccNumber shortName E-value location
Molecular Function GO:0005515 protein binding    
HMMPfam PF00400 WD40 6e-11 251-287
292-326
345-373
392-427
HMMSmart SM00320 WD40 0.83 245-287
290-330
334-373
387-427
432-472
ProfileScan PS50082 WD_REPEATS_2 16.089 254-288
394-436
IPR015943 WD40/YVTN repeat-like-containing domain
Molecular Function GO:0005515 protein binding    
Gene3D G3DSA:2.130.10.10 no description 4.2e-50 122-476
IPR017986 WD40-repeat-containing domain
Molecular Function GO:0005515 protein binding    
ProfileScan PS50294 WD_REPEATS_REGION 30.347 254-481
superfamily SSF50978 WD40 1.3e-47 122-476
IPR019775 WD40 repeat, conserved site
PatternScan PS00678 WD_REPEATS_1 NA 274-288
414-428
IPR020472 G-protein beta WD-40 repeat
FPrintScan PR00320 GPROTEINBRPT 2.5e-07 207-221
274-288
414-428
no_ID  
HMMPanther PTHR14091 WD 8e-159 149-486
Seg seg seg NA 131-140
234-253
Wolf-PSORT
Lj2g3v3339150.1	cyto 5, chlo 3, cyto_pero 3, nucl 2, plas 2, chlo_mito 2, nucl_plas 2
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj2g3v3339150.1