Miyakogusa Predicted Gene

Lj2g3v2748860.1

Related links:

Predicted Sequence Links:

Genome Sequence: Lj3.0_chr2

Full length sequence(43247325 bp) Sequence Cut

Init: Term:
reverse complement

Results of Blast2 searches (The best-hits are tabulated.):

database Accession Score Iden
(%) Posi
(%) Definition

TrEMBL I1M6J5_SOYBN 867 66.4 73.9 (tr|I1M6J5) Uncharacterized protein OS=Glycine max PE=4 SV=1

TAIR_pep AT2G40140.2 526 45.1 56.3 | Symbols: CZF1, ZFAR1, SZF2, ATSZF2 | zinc finger (CCCH-type) family protein | chr2:16772537-16774330 FORWARD LENGTH=597

Medicago Medtr5g082830.1 859 67.7 72.9 | ARM repeat CCCH-type zinc finger protein | HC | chr5:35642238-35645468 | 20130731

Soybean Glyma14g01990.2 867 66.4 73.9

LJGI gnl|LJGI|TC78964 3937 99.9 99.9 similar to UniRef100_Q0GIK4 Cluster: Cys-3-His zinc finger protein; n=1; Capsicum annuum|Rep: Cys-3-His zinc finger protein - Capsicum annuum (Bell pepper), partial (59%)

A list of protein families, domains and functional sites (searches in InterPro)

Lj2g3v2748860.1 length: 664 aa.

IPR000571 Zinc finger, CCCH-type

method AccNumber shortName E-value location

Molecular Function GO:0003676 nucleic acid binding

Molecular Function GO:0008270 zinc ion binding

HMMPfam PF00642 zf-CCCH 4.6e-05 267-288

HMMSmart SM00356 zinc 22 263-289
298-321

ProfileScan PS50103 ZF_C3H1 6.427 263-290
298-322

IPR002110 Ankyrin repeat

Molecular Function GO:0005515 protein binding

HMMSmart SM00248 ankyrin 0.036 27-57
74-104
109-141

ProfileScan PS50088 ANK_REPEAT 10.606 74-98
109-144

IPR020683 Ankyrin repeat-containing domain

Gene3D G3DSA:1.25.40.20 no description 2.1e-16 31-179

HMMPfam PF12796 Ank_2 3.6e-11 38-141

ProfileScan PS50297 ANK_REP_REGION 15.645 74-183

superfamily SSF48403 Ankyrin 3.9e-15 26-154

no_ID

HMMPanther PTHR14493 UNCHARACTERIZED 9.4e-211 31-663

HMMPanther PTHR14493:SF20 CZF1/ZFAR1, 9.4e-211 31-663

Seg seg seg NA 3-12
122-144
348-374
430-439
530-547
567-578

superfamily SSF90229 CCCH 0.011 258-291
293-328

Wolf-PSORT

Lj2g3v2748860.1 nucl 11, cyto 2

PTS1 (Peroxisome targeting signal type 1)

entry_id prediction score sppta spptna fp profile

Lj2g3v2748860.1

Top Kazusa DNA Research Institute

database	Accession	Score	Iden (%)	Posi (%)	Definition
TrEMBL	I1M6J5_SOYBN	867	66.4	73.9	(tr\|I1M6J5) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep	AT2G40140.2	526	45.1	56.3	\| Symbols: CZF1, ZFAR1, SZF2, ATSZF2 \| zinc finger (CCCH-type) family protein \| chr2:16772537-16774330 FORWARD LENGTH=597
Medicago	Medtr5g082830.1	859	67.7	72.9	\| ARM repeat CCCH-type zinc finger protein \| HC \| chr5:35642238-35645468 \| 20130731
Soybean	Glyma14g01990.2	867	66.4	73.9
LJGI	gnl\|LJGI\|TC78964	3937	99.9	99.9	similar to UniRef100_Q0GIK4 Cluster: Cys-3-His zinc finger protein; n=1; Capsicum annuum\|Rep: Cys-3-His zinc finger protein - Capsicum annuum (Bell pepper), partial (59%)

IPR000571	Zinc finger, CCCH-type
Lj2g3v2748860.1				length: 664 aa.
method	AccNumber	shortName	E-value	location
Molecular Function	GO:0003676	nucleic acid binding
Molecular Function	GO:0008270	zinc ion binding
HMMPfam	PF00642	zf-CCCH	4.6e-05	267-288
HMMSmart	SM00356	zinc	22	263-289 298-321
ProfileScan	PS50103	ZF_C3H1	6.427	263-290 298-322
IPR002110	Ankyrin repeat
Molecular Function	GO:0005515	protein binding
HMMSmart	SM00248	ankyrin	0.036	27-57 74-104 109-141
ProfileScan	PS50088	ANK_REPEAT	10.606	74-98 109-144
IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	no description	2.1e-16	31-179
HMMPfam	PF12796	Ank_2	3.6e-11	38-141
ProfileScan	PS50297	ANK_REP_REGION	15.645	74-183
superfamily	SSF48403	Ankyrin	3.9e-15	26-154
no_ID
HMMPanther	PTHR14493	UNCHARACTERIZED	9.4e-211	31-663
HMMPanther	PTHR14493:SF20	CZF1/ZFAR1,	9.4e-211	31-663
Seg	seg	seg	NA	3-12 122-144 348-374 430-439 530-547 567-578
superfamily	SSF90229	CCCH	0.011	258-291 293-328