Miyakogusa Predicted Gene

Lj2g3v2585500.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr2
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL G7KBR0_MEDTR 682 85.9 94.2 (tr|G7KBR0) Ribosomal RNA large subunit methyltransferase N OS=Medicago truncatula GN=MTR_5g079860 PE=3 SV=1
TAIR_pep AT2G39670.1 583 76.8 90.7 | Symbols: | Radical SAM superfamily protein | chr2:16534303-16536986 FORWARD LENGTH=428
Medicago Medtr5g079860.1 684 86.0 94.2 | 23S rRNA m2A2503 methyltransferase | HC | chr5:34153185-34158285 | 20130731
Soybean Glyma14g07450.1 640 77.4 86.7  
LJGI gnl|LJGI|TC63339 1548 100.0 100.0 similar to UniRef100_A7PIW5 Cluster: Chromosome chr13 scaffold_17, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr13 scaffold_17, whole genome shotgun sequence - Vitis vinifera (Grape), partial (54%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj2g3v2585500.1 length: 406 aa.
IPR004383 Ribosomal RNA large subunit methyltransferase RlmN/Cfr
method AccNumber shortName E-value location
Cellular Component GO:0005737 cytoplasm    
Biological Process GO:0006364 rRNA processing    
Molecular Function GO:0008173 RNA methyltransferase activity    
HMMPIR PIRSF006004 Predicted 2.2e-171 23-389
HMMPanther PTHR30544 23S 3.4e-149 14-401
HMMTigr TIGR00048 TIGR00048: 2e-119 40-380
IPR006638 Elongator protein 3/MiaB/NifB
Molecular Function GO:0003824 catalytic activity    
Molecular Function GO:0051536 iron-sulfur cluster binding    
HMMSmart SM00729 Elongator 0.0064 143-351
IPR007197 Radical SAM
Molecular Function GO:0003824 catalytic activity    
Molecular Function GO:0051536 iron-sulfur cluster binding    
HMMPfam PF04055 Radical_SAM 7.6e-12 148-305
IPR013785 Aldolase-type TIM barrel
Molecular Function GO:0003824 catalytic activity    
Gene3D G3DSA:3.20.20.70 no description 6.4e-14 146-363
IPR027492 Dual-specificity RNA methyltransferase RlmN
Biological Process GO:0030488 tRNA methylation    
Biological Process GO:0070475 rRNA base methylation    
HAMAP MF_01849 RNA_methyltr_RlmN 63.173 38-383
no_ID  
HMMPanther PTHR30544:SF0 23S 3.4e-149 14-401
HMMPfam PF13394 Fer4_14 6e-05 152-220
Seg seg seg NA 10-24
superfamily SSF102114 Radical 1.8e-14 107-340
Wolf-PSORT
Lj2g3v2585500.1	chlo 10, mito 4
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj2g3v2585500.1