Miyakogusa Predicted Gene

Lj2g3v2089770.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr2
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I1JAF5_SOYBN 479 60.8 67.6 (tr|I1JAF5) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep AT5G12410.1 296 64.2 78.8 | Symbols: | THUMP domain-containing protein | chr5:4021974-4023950 REVERSE LENGTH=376
Medicago Medtr5g009010.1 388 73.0 83.1 | THUMP domain protein | HC | chr5:2047761-2052587 | 20130731
Soybean Glyma01g43640.1 479 60.8 67.6  
LJGI gnl|LJGI|TC68375 2640 99.1 99.1 similar to UniRef100_A7PQW7 Cluster: Chromosome chr6 scaffold_25, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr6 scaffold_25, whole genome shotgun sequence - Vitis vinifera (Grape), partial (76%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj2g3v2089770.1 length: 456 aa.
IPR004114 THUMP
method AccNumber shortName E-value location
Molecular Function GO:0003723 RNA binding    
HMMPfam PF02926 THUMP 8.5e-09 348-438
HMMSmart SM00981 no description 8.6e-11 348-440
ProfileScan PS51165 THUMP 22.479 334-440
no_ID  
HMMPanther PTHR13452 THUMP 4.4e-88 23-455
HMMPanther PTHR13452:SF3 SUBFAMILY 4.4e-88 23-455
Seg seg seg NA 5-19
92-117
superfamily SSF143437 THUMP 1.6e-12 346-442
Wolf-PSORT
Lj2g3v2089770.1	cyto 9, cysk 2, nucl 1, mito 1, plas 1, nucl_plas 1, mito_plas 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj2g3v2089770.1