Miyakogusa Predicted Gene
- Lj2g3v2017500.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr2
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
I3SR01_LOTJA |
313 |
89.6 |
90.1 |
(tr|I3SR01) Uncharacterized protein OS=Lotus japonicus PE=2 SV=1 |
| TAIR_pep |
AT5G23750.2 |
150 |
59.8 |
78.8 |
| Symbols: | Remorin family protein | chr5:8010004-8011453 REVERSE LENGTH=201 |
| Medicago |
Medtr5g010590.1 |
186 |
58.9 |
69.0 |
| carboxy-terminal region remorin | HC | chr5:2869609-2871761 | 20130731 |
| Soybean |
Glyma11g02740.2 |
199 |
75.6 |
90.4 |
|
| LJGI |
gnl|LJGI|TC74562 |
714 |
99.2 |
99.2 |
weakly similar to UniRef100_Q8LC13 Cluster: Remorin; n=1; Arabidopsis thaliana|Rep: Remorin - Arabidopsis thaliana (Mouse-ear cress), partial (62%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj2g3v2017500.1 |
length: 182 aa. |
| IPR005516 |
Remorin, C-terminal |
| method |
AccNumber |
shortName |
E-value |
location |
| HMMPfam |
PF03763 |
Remorin_C |
3e-28 |
82-182 |
| no_ID |
|
| Coil |
coil |
coiled-coil |
NA |
117-160 |
| HMMPanther |
PTHR31775 |
FAMILY |
1.7e-47 |
57-182 |
| Seg |
seg |
seg |
NA |
21-37 |
- Wolf-PSORT
Lj2g3v2017500.1 nucl 4, cyto 3, mito 3, chlo 2, cysk_nucl 2, mito_plas 2, cyto_plas 2
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj2g3v2017500.1 |
|