Miyakogusa Predicted Gene

Lj2g3v1988820.1

Related links:

Predicted Sequence Links:

Genome Sequence: Lj3.0_chr2

Full length sequence(43247325 bp) Sequence Cut

Init: Term:
reverse complement

Results of Blast2 searches (The best-hits are tabulated.):

database Accession Score Iden
(%) Posi
(%) Definition

TrEMBL M5WEM0_PRUPE 632 49.7 64.2 (tr|M5WEM0) Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa019972mg PE=4 SV=1

TAIR_pep AT1G05490.1 581 44.6 61.6 | Symbols: chr31 | chromatin remodeling 31 | chr1:1618795-1623195 REVERSE LENGTH=1410

Medicago Medtr7g450820.1 571 46.7 61.5 | SNF2 family amine-terminal protein | LC | chr7:16993181-16988673 | 20130731

Soybean Glyma08g45330.1 556 43.1 61.2

LJGI gnl|LJGI|TC79348 54.0 96.8 96.8 similar to UniRef100_A7PJT0 Cluster: Chromosome chr12 scaffold_18, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr12 scaffold_18, whole genome shotgun sequence - Vitis vinifera (Grape), partial (12%)

A list of protein families, domains and functional sites (searches in InterPro)

Lj2g3v1988820.1 length: 970 aa.

IPR000330 SNF2-related

method AccNumber shortName E-value location

Molecular Function GO:0003677 DNA binding

Molecular Function GO:0005524 ATP binding

HMMPfam PF00176 SNF2_N 1.5e-29 403-721

IPR001650 Helicase, C-terminal

Molecular Function GO:0003676 nucleic acid binding

Molecular Function GO:0004386 helicase activity

Molecular Function GO:0005524 ATP binding

HMMPfam PF00271 Helicase_C 8.1e-10 798-877

HMMSmart SM00490 helicase 2.7e-13 792-877

ProfileScan PS51194 HELICASE_CTER 12.979 762-925

IPR014001 Helicase, superfamily 1/2, ATP-binding domain

HMMSmart SM00487 DEAD-like 1.2e-11 396-633

ProfileScan PS51192 HELICASE_ATP_BIND_1 10.308 427-620

IPR027417 P-loop containing nucleoside triphosphate hydrolase

superfamily SSF52540 P-loop 2.2e-36 561-912
389-621

no_ID

Gene3D G3DSA:3.40.50.300 no description 5.8e-15 399-614
754-889

HMMPanther PTHR10799 SWI/SNF-RELATED 2.1e-209 263-948

HMMPanther PTHR10799:SF41 ATP 2.1e-209 263-948

Seg seg seg NA 35-46
64-77
145-166
172-192
270-280
374-386

Wolf-PSORT

Lj2g3v1988820.1 nucl 6, mito 5, chlo 3, cyto_nucl 3, cysk_nucl 3, nucl_plas 3

PTS1 (Peroxisome targeting signal type 1)

entry_id prediction score sppta spptna fp profile

Lj2g3v1988820.1

Top Kazusa DNA Research Institute

database	Accession	Score	Iden (%)	Posi (%)	Definition
TrEMBL	M5WEM0_PRUPE	632	49.7	64.2	(tr\|M5WEM0) Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa019972mg PE=4 SV=1
TAIR_pep	AT1G05490.1	581	44.6	61.6	\| Symbols: chr31 \| chromatin remodeling 31 \| chr1:1618795-1623195 REVERSE LENGTH=1410
Medicago	Medtr7g450820.1	571	46.7	61.5	\| SNF2 family amine-terminal protein \| LC \| chr7:16993181-16988673 \| 20130731
Soybean	Glyma08g45330.1	556	43.1	61.2
LJGI	gnl\|LJGI\|TC79348	54.0	96.8	96.8	similar to UniRef100_A7PJT0 Cluster: Chromosome chr12 scaffold_18, whole genome shotgun sequence; n=1; Vitis vinifera\|Rep: Chromosome chr12 scaffold_18, whole genome shotgun sequence - Vitis vinifera (Grape), partial (12%)

IPR000330	SNF2-related
Lj2g3v1988820.1				length: 970 aa.
method	AccNumber	shortName	E-value	location
Molecular Function	GO:0003677	DNA binding
Molecular Function	GO:0005524	ATP binding
HMMPfam	PF00176	SNF2_N	1.5e-29	403-721
IPR001650	Helicase, C-terminal
Molecular Function	GO:0003676	nucleic acid binding
Molecular Function	GO:0004386	helicase activity
Molecular Function	GO:0005524	ATP binding
HMMPfam	PF00271	Helicase_C	8.1e-10	798-877
HMMSmart	SM00490	helicase	2.7e-13	792-877
ProfileScan	PS51194	HELICASE_CTER	12.979	762-925
IPR014001	Helicase, superfamily 1/2, ATP-binding domain
HMMSmart	SM00487	DEAD-like	1.2e-11	396-633
ProfileScan	PS51192	HELICASE_ATP_BIND_1	10.308	427-620
IPR027417	P-loop containing nucleoside triphosphate hydrolase
superfamily	SSF52540	P-loop	2.2e-36	561-912 389-621
no_ID
Gene3D	G3DSA:3.40.50.300	no description	5.8e-15	399-614 754-889
HMMPanther	PTHR10799	SWI/SNF-RELATED	2.1e-209	263-948
HMMPanther	PTHR10799:SF41	ATP	2.1e-209	263-948
Seg	seg	seg	NA	35-46 64-77 145-166 172-192 270-280 374-386