Miyakogusa Predicted Gene
- Lj2g3v1980810.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr2
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
I1J9G1_SOYBN |
794 |
85.5 |
92.7 |
(tr|I1J9G1) Uncharacterized protein OS=Glycine max PE=4 SV=1 |
| TAIR_pep |
AT3G49810.1 |
668 |
72.8 |
84.2 |
| Symbols: | ARM repeat superfamily protein | chr3:18474936-18476282 REVERSE LENGTH=448 |
| Medicago |
Medtr5g015210.1 |
804 |
88.5 |
92.5 |
| E3 ubiquitin ligase PUB14 | HC | chr5:5239028-5237029 | 20130731 |
| Soybean |
Glyma01g40310.1 |
794 |
85.5 |
92.7 |
|
| LJGI |
gnl|LJGI|DC599839 |
414 |
100.0 |
100.0 |
similar to UniRef100_Q058P4 Cluster: At3g49810; n=1; Arabidopsis thaliana|Rep: At3g49810 - Arabidopsis thaliana (Mouse-ear cress), partial (9%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj2g3v1980810.1 |
length: 449 aa. |
| IPR003613 |
U box domain |
| method |
AccNumber |
shortName |
E-value |
location |
| Cellular Component |
GO:0000151 |
ubiquitin ligase complex |
|
|
| Molecular Function |
GO:0004842 |
ubiquitin-protein ligase activity |
|
|
| Biological Process |
GO:0016567 |
protein ubiquitination |
|
|
| HMMPfam |
PF04564 |
U-box |
7.2e-15 |
65-135 |
| HMMSmart |
SM00504 |
Modified |
1.7e-28 |
68-131 |
| IPR011989 |
Armadillo-like helical |
| Gene3D |
G3DSA:1.25.10.10 |
no description |
4.1e-26 |
121-432 |
| IPR013083 |
Zinc finger, RING/FYVE/PHD-type |
| Gene3D |
G3DSA:3.30.40.10 |
no description |
7.8e-25 |
64-120 |
| IPR016024 |
Armadillo-type fold |
| Molecular Function |
GO:0005488 |
binding |
|
|
| superfamily |
SSF48371 |
ARM |
5e-20 |
149-432 |
| no_ID |
|
| HMMPanther |
PTHR22849 |
WDSAM1 |
1.3e-71 |
11-448 |
| Seg |
seg |
seg |
NA |
32-47 |
| superfamily |
SSF57850 |
RING/U-box |
1.7e-23 |
59-144 |
- Wolf-PSORT
Lj2g3v1980810.1 plas 8, vacu 2, golg 2, nucl 1, cyto 1, cyto_nucl 1, E.R._vacu 1
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj2g3v1980810.1 |
|