Miyakogusa Predicted Gene

Lj2g3v1880870.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr2
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL K7K4M3_SOYBN 2023 72.6 80.4 (tr|K7K4M3) DNA polymerase OS=Glycine max PE=3 SV=1
TAIR_pep AT5G67100.1 1623 60.5 73.2 | Symbols: ICU2 | DNA-directed DNA polymerases | chr5:26776994-26785104 FORWARD LENGTH=1524
Medicago Medtr5g017070.1 2110 75.9 82.2 | DNA polymerase | HC | chr5:6204095-6191331 | 20130731
Soybean Glyma01g39430.1 1943 71.8 79.4  
LJGI gnl|LJGI|BP076374 458 100.0 100.0 similar to UniRef100_A7PLB6 Cluster: DNA polymerase; n=1; Vitis vinifera|Rep: DNA polymerase - Vitis vinifera (Grape), partial (5%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj2g3v1880870.1 length: 1358 aa.
IPR004578 DNA-directed DNA polymerase, family B, pol2
method AccNumber shortName E-value location
Molecular Function GO:0000166 nucleotide binding    
Molecular Function GO:0003677 DNA binding    
Molecular Function GO:0003887 DNA-directed DNA polymerase activity    
Biological Process GO:0006260 DNA replication    
HMMTigr TIGR00592 pol2: 1.2e-236 159-1113
IPR006133 DNA-directed DNA polymerase, family B, exonuclease domain
Molecular Function GO:0003887 DNA-directed DNA polymerase activity    
Biological Process GO:0006260 DNA replication    
HMMPfam PF03104 DNA_pol_B_exo1 2e-23 212-588
IPR006134 DNA-directed DNA polymerase, family B, multifunctional domain
Molecular Function GO:0000166 nucleotide binding    
Molecular Function GO:0003677 DNA binding    
Molecular Function GO:0003887 DNA-directed DNA polymerase activity    
Biological Process GO:0006260 DNA replication    
HMMPfam PF00136 DNA_pol_B 4.7e-111 663-1134
IPR006172 DNA-directed DNA polymerase, family B
Molecular Function GO:0000166 nucleotide binding    
Molecular Function GO:0003676 nucleic acid binding    
Molecular Function GO:0003887 DNA-directed DNA polymerase activity    
Biological Process GO:0006139 nucleobase-containing compound metabolic process    
FPrintScan PR00106 DNAPOLB 1.5e-11 756-769
832-844
885-893
HMMSmart SM00486 DNA 9.8e-119 396-899
IPR012337 Ribonuclease H-like domain
Molecular Function GO:0003676 nucleic acid binding    
superfamily SSF53098 Ribonuclease 2.5e-67 175-683
IPR015088 Zinc finger, DNA-directed DNA polymerase, family B, alpha
Molecular Function GO:0001882 nucleoside binding    
Molecular Function GO:0003887 DNA-directed DNA polymerase activity    
Biological Process GO:0006260 DNA replication    
HMMPfam PF08996 zf-DNA_Pol 1.4e-30 1156-1354
IPR017964 DNA-directed DNA polymerase, family B, conserved site
Molecular Function GO:0000166 nucleotide binding    
Molecular Function GO:0003676 nucleic acid binding    
Molecular Function GO:0003887 DNA-directed DNA polymerase activity    
Biological Process GO:0006139 nucleobase-containing compound metabolic process    
PatternScan PS00116 DNA_POLYMERASE_B NA 887-895
IPR023211 DNA polymerase, palm domain
Gene3D G3DSA:3.90.1600.10 no description 7.2e-23 854-975
no_ID  
Coil coil coiled-coil NA 913-934
Gene3D G3DSA:1.10.287.690 no description 1.3e-17 797-848
Gene3D G3DSA:3.30.420.10 no description 1.4e-34 475-660
HMMPanther PTHR10322 DNA 0 106-1312
HMMPanther PTHR10322:SF3 DNA 0 106-1312
Seg seg seg NA 81-93
725-740
930-946
superfamily SSF56672 DNA/RNA 5.2e-115 678-1133
Wolf-PSORT
Lj2g3v1880870.1	nucl 10, cyto 3
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj2g3v1880870.1