Miyakogusa Predicted Gene
- Lj2g3v1378940.2
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr2
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
I1J5A9_SOYBN |
291 |
91.3 |
96.7 |
(tr|I1J5A9) Uncharacterized protein OS=Glycine max PE=4 SV=1 |
| TAIR_pep |
AT1G70280.2 |
238 |
75.0 |
85.5 |
| Symbols: | NHL domain-containing protein | chr1:26466086-26468471 REVERSE LENGTH=509 |
| Medicago |
Medtr5g034750.1 |
279 |
89.0 |
92.2 |
| NHL repeat protein | HC | chr5:15072581-15077047 | 20130731 |
| Soybean |
Glyma01g03880.1 |
291 |
91.3 |
96.7 |
|
| LJGI |
gnl|LJGI|TC79541 |
573 |
99.7 |
99.7 |
similar to UniRef100_A7Q2F1 Cluster: Chromosome chr1 scaffold_46, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr1 scaffold_46, whole genome shotgun sequence - Vitis vinifera (Grape), partial (43%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj2g3v1378940.2 |
length: 152 aa. |
| IPR001258 |
NHL repeat |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0005515 |
protein binding |
|
|
| HMMPfam |
PF01436 |
NHL |
3.5e-05 |
2-22 |
| IPR011042 |
Six-bladed beta-propeller, TolB-like |
| Gene3D |
G3DSA:2.120.10.30 |
no description |
1e-07 |
2-86 |
| no_ID |
|
| HMMPanther |
PTHR13833 |
FAMILY |
7.4e-47 |
1-130 |
| HMMPanther |
PTHR13833:SF16 |
NHL |
7.4e-47 |
1-130 |
| superfamily |
SSF63829 |
Calcium-dependent |
5.6e-07 |
2-106 |
- Wolf-PSORT
Lj2g3v1378940.2 chlo 3, plas 3, nucl 2, cyto 2, extr 2, cyto_nucl 2, chlo_mito 2, E.R._plas 2, mito_plas 2
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj2g3v1378940.2 |
|