Miyakogusa Predicted Gene

Lj2g3v1171110.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr2
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I1JDW7_SOYBN 470 68.4 71.7 (tr|I1JDW7) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep AT1G25560.1 337 54.7 62.3 | Symbols: TEM1, EDF1 | AP2/B3 transcription factor family protein | chr1:8981891-8982976 REVERSE LENGTH=361
Medicago Medtr5g053920.1 442 64.4 68.7 | AP2/ERF and B3 domain transcription factor | HC | chr5:22189479-22191258 | 20130731
Soybean Glyma02g11060.1 470 68.4 71.7  
LJGI gnl|LJGI|TC67138 799 100.0 100.0 similar to UniRef100_Q45EZ4 Cluster: RAV-like DNA-binding protein; n=1; Glycine max|Rep: RAV-like DNA-binding protein - Glycine max (Soybean), partial (29%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj2g3v1171110.1 length: 369 aa.
IPR001471 AP2/ERF domain
method AccNumber shortName E-value location
Molecular Function GO:0003700 sequence-specific DNA binding transcription factor activity    
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
Gene3D G3DSA:3.30.730.10 no description 6.3e-20 58-113
HMMPfam PF00847 AP2 4.1e-11 57-105
HMMSmart SM00380 DNA-binding 8.7e-30 58-119
ProfileScan PS51032 AP2_ERF 20.257 58-113
IPR003340 B3 DNA binding domain
Molecular Function GO:0003677 DNA binding    
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
HMMPfam PF02362 B3 2.7e-22 185-284
HMMSmart SM01019 B3 3.2e-14 185-291
ProfileScan PS50863 B3 10.602 185-291
IPR015300 DNA-binding pseudobarrel domain
Gene3D G3DSA:2.40.330.10 no description 2.1e-31 179-290
superfamily SSF101936 DNA-binding 7.3e-24 179-296
IPR016177 DNA-binding, integrase-type
Molecular Function GO:0003677 DNA binding    
superfamily SSF54171 DNA-binding 1.2e-19 57-116
no_ID  
HMMPanther PTHR31140 FAMILY 5.3e-88 2-336
Seg seg seg NA 10-27
119-129
167-182
216-233
327-339
Wolf-PSORT
Lj2g3v1171110.1	nucl 10.5, cyto_nucl 6.5, cyto 1.5
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj2g3v1171110.1