Miyakogusa Predicted Gene
- Lj2g3v1155210.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr2
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
G7JX88_MEDTR |
271 |
83.2 |
88.4 |
(tr|G7JX88) COSII OS=Medicago truncatula GN=MTR_5g057670 PE=2 SV=1 |
| TAIR_pep |
AT1G13380.1 |
213 |
69.6 |
79.1 |
| Symbols: | Protein of unknown function (DUF1218) | chr1:4589218-4590362 REVERSE LENGTH=188 |
| Medicago |
Medtr5g057670.1 |
271 |
83.2 |
88.4 |
| fiber protein Fb34 | HC | chr5:23809011-23804986 | 20130731 |
| Soybean |
Glyma08g31000.1 |
262 |
79.4 |
86.5 |
|
| LJGI |
gnl|LJGI|TC61735 |
928 |
100.0 |
100.0 |
similar to UniRef100_A7P384 Cluster: Chromosome chr1 scaffold_5, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr1 scaffold_5, whole genome shotgun sequence - Vitis vinifera (Grape), partial (97%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj2g3v1155210.1 |
length: 155 aa. |
| IPR009606 |
Protein of unknown function DUF1218 |
| method |
AccNumber |
shortName |
E-value |
location |
| HMMPfam |
PF06749 |
DUF1218 |
1e-25 |
25-122 |
| no_ID |
|
| HMMPanther |
PTHR31769 |
FAMILY |
2.1e-59 |
1-153 |
| HMMPanther |
PTHR31769:SF0 |
SUBFAMILY |
2.1e-59 |
1-153 |
| Seg |
seg |
seg |
NA |
27-37 |
- Wolf-PSORT
Lj2g3v1155210.1 E.R. 3.5, E.R._plas 3.5, plas 2.5, chlo 2, cyto 2, nucl 1, mito 1, extr 1, vacu 1, cyto_pero 1
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj2g3v1155210.1 |
|