Miyakogusa Predicted Gene

Lj2g3v0346250.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr2
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL G7KPR4_MEDTR 692 67.1 81.9 (tr|G7KPR4) Pentatricopeptide repeat-containing protein OS=Medicago truncatula GN=MTR_6g069300 PE=4 SV=1
TAIR_pep AT1G12300.1 402 37.5 60.1 | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:4184163-4186076 REVERSE LENGTH=637
Medicago Medtr0308s0020.1 701 66.7 82.0 | pentatricopeptide (PPR) repeat protein | LC | scaffold0308:7816-9441 | 20130731
Soybean Glyma09g30530.1 683 64.9 82.3  
LJGI gnl|LJGI|GO030841 1049 99.6 99.6 weakly similar to UniRef100_A7R617 Cluster: Chromosome undetermined scaffold_1129, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome undetermined scaffold_1129, whole genome shotgun sequence - Vitis vinifera (Grape), partial (13%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj2g3v0346250.1 length: 497 aa.
IPR002885 Pentatricopeptide repeat
method AccNumber shortName E-value location
HMMPfam PF12854 PPR_1 3.9e-08 109-140
214-246
250-282
286-316
459-491
HMMPfam PF13041 PPR_2 1.2e-15 52-91
148-196
323-372
397-442
HMMTigr TIGR00756 PPR: 0.0014 46-80
81-114
151-184
186-220
221-255
256-290
292-325
326-360
361-394
396-429
432-465
466-496
ProfileScan PS51375 PPR 10.139 9-43
44-78
79-113
114-148
149-183
184-218
219-253
254-288
289-323
324-358
359-393
394-428
429-463
464-497
IPR011990 Tetratricopeptide-like helical
Molecular Function GO:0005515 protein binding    
Gene3D G3DSA:1.25.40.10 no description 4.5e-06 222-490
no_ID  
HMMPanther PTHR24015 FAMILY 2.3e-170 1-496
HMMPanther PTHR24015:SF0 SUBFAMILY 2.3e-170 1-496
superfamily SSF48452 TPR-like 0.0027 219-317
339-456
Wolf-PSORT
Lj2g3v0346250.1	cyto 6, chlo 4.5, chlo_mito 3, cyto_pero 3
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj2g3v0346250.1