Miyakogusa Predicted Gene

Lj1g3v5060590.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr1
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL K7N0E4_SOYBN 300 58.4 70.4 (tr|K7N0E4) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep AT1G01080.1 222 54.3 76.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr1:45503-46789 REVERSE LENGTH=293
Medicago Medtr7g118230.1 193 57.5 68.8 | RNA recognition motif, a.k.a. RRM, RBD protein | HC | chr7:49069532-49073325 | 20130731
Soybean Glyma19g44950.1 285 53.2 64.2  
LJGI gnl|LJGI|TC69459 1572 99.5 99.5 weakly similar to UniRef100_A7PXT7 Cluster: Chromosome chr15 scaffold_37, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr15 scaffold_37, whole genome shotgun sequence - Vitis vinifera (Grape), partial (66%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj1g3v5060590.1 length: 272 aa.
IPR000504 RNA recognition motif domain
method AccNumber shortName E-value location
Molecular Function GO:0003676 nucleic acid binding    
HMMPfam PF00076 RRM_1 2.6e-16 91-161
194-262
HMMSmart SM00360 RNA 1.2e-18 90-163
193-265
ProfileScan PS50102 RRM 17.370 89-167
192-269
IPR012677 Nucleotide-binding, alpha-beta plait
Molecular Function GO:0000166 nucleotide binding    
Gene3D G3DSA:3.30.70.330 no description 9.3e-20 79-172
190-267
no_ID  
HMMPanther PTHR24012 FAMILY 7.4e-53 66-265
HMMPanther PTHR24012:SF151SUBFAMILY NOT 7.4e-53 66-265
Seg seg seg NA 32-52
62-77
superfamily SSF54928 RNA-binding 6.2e-21 79-186
192-267
Wolf-PSORT
Lj1g3v5060590.1	chlo 14
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj1g3v5060590.1