Miyakogusa Predicted Gene

Lj1g3v5060520.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr1
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I1JS33_SOYBN 692 76.5 81.6 (tr|I1JS33) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep AT4G00830.2 547 67.0 82.0 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr4:352782-354965 FORWARD LENGTH=495
Medicago Medtr7g118120.1 619 71.1 77.2 | RNA recognition motif, a.k.a. RRM, RBD protein | HC | chr7:49025533-49031900 | 20130731
Soybean Glyma03g42150.1 692 76.5 81.6  
LJGI gnl|LJGI|TC59691 1550 99.9 99.9 similar to UniRef100_Q2HTD6 Cluster: RNA-binding region RNP-1 (RNA recognition motif); Calcium-binding EF- hand; n=1; Medicago truncatula|Rep: RNA-binding region RNP-1 (RNA recognition motif); Calcium-binding EF- hand - Medicago truncatula (Barrel medic), partial (45%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj1g3v5060520.1 length: 483 aa.
IPR000504 RNA recognition motif domain
method AccNumber shortName E-value location
Molecular Function GO:0003676 nucleic acid binding    
HMMPfam PF00076 RRM_1 1.6e-15 111-181
191-257
286-354
HMMSmart SM00360 RNA 1.4e-19 110-183
190-267
285-357
ProfileScan PS50102 RRM 12.322 109-187
284-361
189-271
IPR003954 RNA recognition motif domain, eukaryote
Molecular Function GO:0003676 nucleic acid binding    
HMMSmart SM00361 RNA 1.1e-05 110-183
IPR012677 Nucleotide-binding, alpha-beta plait
Molecular Function GO:0000166 nucleotide binding    
Gene3D G3DSA:3.30.70.330 no description 5.2e-23 112-268
269-367
no_ID  
HMMPanther PTHR24011 FAMILY 8.7e-168 8-470
HMMPanther PTHR24011:SF134SUBFAMILY NOT 8.7e-168 8-470
Seg seg seg NA 14-47
50-61
385-398
456-479
superfamily SSF54928 RNA-binding 8.2e-27 189-368
30-184
Wolf-PSORT
Lj1g3v5060520.1	nucl 13
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj1g3v5060520.1