Miyakogusa Predicted Gene

Lj1g3v4885920.2
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr1
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I1NB64_SOYBN 306 79.7 83.4 (tr|I1NB64) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep AT1G02840.3 269 68.7 75.4 | Symbols: SR1, ATSRP34, SRP34, SR34, At-SR34 | RNA-binding (RRM/RBD/RNP motifs) family protein | chr1:626918-629583 FORWARD LENGTH=303
Medicago Medtr8g058530.1 299 78.1 82.4 | pre-mRNA-splicing factor SF2-like protein | HC | chr8:20148291-20144393 | 20130731
Soybean Glyma19g39850.6 306 79.7 83.4  
LJGI gnl|LJGI|TC58662 1409 100.0 100.0 similar to UniRef100_A7Q0B9 Cluster: Chromosome chr7 scaffold_42, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr7 scaffold_42, whole genome shotgun sequence - Vitis vinifera (Grape), partial (64%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj1g3v4885920.2 length: 315 aa.
IPR000504 RNA recognition motif domain
method AccNumber shortName E-value location
Molecular Function GO:0003676 nucleic acid binding    
HMMPfam PF00076 RRM_1 2.3e-10 9-76
113-175
HMMSmart SM00360 RNA 6.6e-07 8-78
112-185
ProfileScan PS50102 RRM 9.388 7-82
111-189
IPR012677 Nucleotide-binding, alpha-beta plait
Molecular Function GO:0000166 nucleotide binding    
Gene3D G3DSA:3.30.70.330 no description 2.5e-24 3-92
107-200
no_ID  
HMMPanther PTHR10548 SPLICING 3.3e-128 2-315
HMMPanther PTHR10548:SF13 SPLICING 3.3e-128 2-315
Seg seg seg NA 82-109
188-269
277-315
superfamily SSF54928 RNA-binding 1.4e-32 6-192
Wolf-PSORT
Lj1g3v4885920.2	nucl 12, mito 1, plas 1, mito_plas 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj1g3v4885920.2