Miyakogusa Predicted Gene

Lj1g3v4717500.2
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr1
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I1JQ30_SOYBN 505 76.5 82.8 (tr|I1JQ30) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep AT3G52660.2 399 62.8 81.9 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr3:19522598-19524735 FORWARD LENGTH=471
Medicago Medtr7g104800.2 488 73.2 81.7 | RNA recognition motif, a.k.a. RRM, RBD protein | HC | chr7:42489150-42483010 | 20130731
Soybean Glyma03g35450.2 505 76.5 82.8  
LJGI gnl|LJGI|TC82005 638 98.6 98.6 similar to UniRef100_A7QFA8 Cluster: Chromosome undetermined scaffold_87, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome undetermined scaffold_87, whole genome shotgun sequence - Vitis vinifera (Grape), partial (31%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj1g3v4717500.2 length: 955 aa.
IPR000504 RNA recognition motif domain
method AccNumber shortName E-value location
Molecular Function GO:0003676 nucleic acid binding    
HMMPfam PF00076 RRM_1 1.3e-16 202-272
282-349
376-445
HMMSmart SM00360 RNA 4.9e-18 201-274
281-358
375-448
ProfileScan PS50102 RRM 15.988 200-278
280-362
374-452
IPR003954 RNA recognition motif domain, eukaryote
Molecular Function GO:0003676 nucleic acid binding    
HMMSmart SM00361 RNA 0.00017 201-274
IPR012677 Nucleotide-binding, alpha-beta plait
Molecular Function GO:0000166 nucleotide binding    
Gene3D G3DSA:3.30.70.330 no description 9.7e-22 203-361
362-458
no_ID  
HMMPanther PTHR24011 FAMILY 1e-128 181-505
HMMPanther PTHR24011:SF134SUBFAMILY NOT 1e-128 181-505
Seg seg seg NA 23-30
478-499
853-866
superfamily SSF54928 RNA-binding 1.8e-21 194-369
367-484
Wolf-PSORT
Lj1g3v4717500.2	nucl 5, cyto 4, chlo 1, mito 1, plas 1, pero 1, chlo_mito 1, E.R._vacu 1, mito_plas 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj1g3v4717500.2