Miyakogusa Predicted Gene

Lj1g3v4717440.2
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr1
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL G7KQW9_MEDTR 430 89.2 93.8 (tr|G7KQW9) Signal recognition particle 54 kDa protein OS=Medicago truncatula GN=MTR_7g104890 PE=1 SV=1
TAIR_pep AT5G03940.1 416 85.8 92.9 | Symbols: FFC, 54CP, CPSRP54, SRP54CP | chloroplast signal recognition particle 54 kDa subunit | chr5:1060265-1063257 REVERSE LENGTH=564
Medicago Medtr7g104890.1 430 89.2 93.8 | signal recognition particle 54 kDa protein | HC | chr7:42524740-42517179 | 20130731
Soybean Glyma03g35470.1 429 88.7 93.3  
LJGI gnl|LJGI|TC66087 470 98.2 98.2 homologue to UniRef100_A2Q2E1 Cluster: GTP-binding signal recognition particle SRP54, G-domain; n=1; Medicago truncatula|Rep: GTP-binding signal recognition particle SRP54, G-domain - Medicago truncatula (Barrel medic), partial (69%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj1g3v4717440.2 length: 240 aa.
IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain
method AccNumber shortName E-value location
Molecular Function GO:0005525 GTP binding    
Biological Process GO:0006614 SRP-dependent cotranslational protein targeting to membrane    
HMMPfam PF00448 SRP54 9.2e-61 1-164
HMMSmart SM00962 SRP54-type 1.1e-71 1-164
PatternScan PS00300 SRP54 NA 137-150
IPR004125 Signal recognition particle, SRP54 subunit, M-domain
Biological Process GO:0006614 SRP-dependent cotranslational protein targeting to membrane    
Molecular Function GO:0008312 7S RNA binding    
Cellular Component GO:0048500 signal recognition particle    
Gene3D G3DSA:1.10.260.30 no description 6.2e-09 195-239
HMMPfam PF02978 SRP_SPB 1.3e-08 195-234
superfamily SSF47446 Signal 1.8e-20 166-240
IPR004780 Signal recognition particle protein Ffh
Molecular Function GO:0003924 GTPase activity    
Molecular Function GO:0005525 GTP binding    
Biological Process GO:0006614 SRP-dependent cotranslational protein targeting to membrane    
Cellular Component GO:0048500 signal recognition particle    
HMMPanther PTHR11564:SF7 SIGNAL 7e-153 1-240
IPR027417 P-loop containing nucleoside triphosphate hydrolase
superfamily SSF52540 P-loop 2e-40 1-166
no_ID  
Gene3D G3DSA:3.40.50.300 no description 1.6e-61 1-165
HMMPanther PTHR11564 GTPASE 7e-153 1-240
Seg seg seg NA 48-58
Wolf-PSORT
Lj1g3v4717440.2	cyto 11, nucl 1.5, cysk_nucl 1.5
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj1g3v4717440.2