Miyakogusa Predicted Gene

Lj1g3v4717440.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr1
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL G7KQW9_MEDTR 858 86.6 91.7 (tr|G7KQW9) Signal recognition particle 54 kDa protein OS=Medicago truncatula GN=MTR_7g104890 PE=1 SV=1
TAIR_pep AT5G03940.1 810 82.2 90.2 | Symbols: FFC, 54CP, CPSRP54, SRP54CP | chloroplast signal recognition particle 54 kDa subunit | chr5:1060265-1063257 REVERSE LENGTH=564
Medicago Medtr7g104890.1 858 86.6 91.7 | signal recognition particle 54 kDa protein | HC | chr7:42524740-42517179 | 20130731
Soybean Glyma03g35470.2 845 87.8 92.3  
LJGI gnl|LJGI|TC66087 1296 99.3 99.3 homologue to UniRef100_A2Q2E1 Cluster: GTP-binding signal recognition particle SRP54, G-domain; n=1; Medicago truncatula|Rep: GTP-binding signal recognition particle SRP54, G-domain - Medicago truncatula (Barrel medic), partial (69%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj1g3v4717440.1 length: 494 aa.
IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain
method AccNumber shortName E-value location
Molecular Function GO:0005525 GTP binding    
Biological Process GO:0006614 SRP-dependent cotranslational protein targeting to membrane    
HMMPfam PF00448 SRP54 1.1e-76 109-303
HMMSmart SM00962 SRP54-type 4.3e-108 108-303
PatternScan PS00300 SRP54 NA 276-289
IPR003593 AAA+ ATPase domain
Molecular Function GO:0000166 nucleotide binding    
Molecular Function GO:0017111 nucleoside-triphosphatase activity    
HMMSmart SM00382 ATPases 1.8e-10 107-254
IPR004125 Signal recognition particle, SRP54 subunit, M-domain
Biological Process GO:0006614 SRP-dependent cotranslational protein targeting to membrane    
Molecular Function GO:0008312 7S RNA binding    
Cellular Component GO:0048500 signal recognition particle    
Gene3D G3DSA:1.10.260.30 no description 1.7e-27 334-436
HMMPfam PF02978 SRP_SPB 8.3e-26 334-432
superfamily SSF47446 Signal 5.6e-39 305-438
IPR004780 Signal recognition particle protein Ffh
Molecular Function GO:0003924 GTPase activity    
Molecular Function GO:0005525 GTP binding    
Biological Process GO:0006614 SRP-dependent cotranslational protein targeting to membrane    
Cellular Component GO:0048500 signal recognition particle    
HMMPanther PTHR11564:SF7 SIGNAL 1.3e-266 6-442
HMMTigr TIGR00959 ffh: 8.8e-168 11-435
IPR013822 Signal recognition particle, SRP54 subunit, helical bundle
Molecular Function GO:0005525 GTP binding    
Biological Process GO:0006614 SRP-dependent cotranslational protein targeting to membrane    
HMMPfam PF02881 SRP54_N 8.6e-19 13-90
HMMSmart SM00963 SRP54-type 6.3e-29 9-94
superfamily SSF47364 Domain 9.1e-25 4-102
IPR022941 Signal recognition particle, SRP54 subunit
Molecular Function GO:0003924 GTPase activity    
Molecular Function GO:0005525 GTP binding    
Biological Process GO:0006614 SRP-dependent cotranslational protein targeting to membrane    
Cellular Component GO:0048500 signal recognition particle    
HAMAP MF_00306 SRP54 32.412 13-450
IPR027417 P-loop containing nucleoside triphosphate hydrolase
superfamily SSF52540 P-loop 2.4e-57 100-305
no_ID  
Coil coil coiled-coil NA 371-392
Gene3D G3DSA:1.20.120.140 no description 2.8e-35 10-98
Gene3D G3DSA:3.40.50.300 no description 3.4e-78 104-304
HMMPanther PTHR11564 GTPASE 1.3e-266 6-442
Seg seg seg NA 187-197
452-464
Wolf-PSORT
Lj1g3v4717440.1	cyto 12, nucl 1, mito 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj1g3v4717440.1 Not targeted -31.100 0 -3.188 32.88% -27.912