Miyakogusa Predicted Gene

Lj1g3v4372170.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr1
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL H8WVC4_LOTJA 646 99.7 100.0 (tr|H8WVC4) E3 ubiquitin ligase-like protein OS=Lotus japonicus GN=SINA2 PE=2 SV=1
TAIR_pep AT3G58040.1 524 79.3 86.4 | Symbols: SINAT2 | seven in absentia of Arabidopsis 2 | chr3:21489612-21491085 FORWARD LENGTH=308
Medicago Medtr7g093600.2 561 85.2 93.2 | ubiquitin ligase SINAT3 | HC | chr7:37208750-37211962 | 20130731
Soybean Glyma19g33170.2 593 89.3 95.8  
LJGI gnl|LJGI|TC62546 1842 99.9 99.9 similar to UniRef100_Q9XGC3 Cluster: SINA2p; n=1; Vitis vinifera|Rep: SINA2p - Vitis vinifera (Grape), partial (89%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj1g3v4372170.1 length: 309 aa.
IPR001841 Zinc finger, RING-type
method AccNumber shortName E-value location
Molecular Function GO:0005515 protein binding    
Molecular Function GO:0008270 zinc ion binding    
ProfileScan PS50089 ZF_RING_2 8.683 61-97
IPR004162 Seven-in-absentia protein, sina
Cellular Component GO:0005634 nucleus    
Biological Process GO:0006511 ubiquitin-dependent protein catabolic process    
Biological Process GO:0007275 multicellular organismal development    
HMMPanther PTHR10315 SEVEN 1.7e-116 49-308
IPR008974 TRAF-like
Molecular Function GO:0005515 protein binding    
superfamily SSF49599 TRAF 1.7e-49 114-306
IPR013010 Zinc finger, SIAH-type
Molecular Function GO:0008270 zinc ion binding    
ProfileScan PS51081 ZF_SIAH 14.314 114-174
IPR013083 Zinc finger, RING/FYVE/PHD-type
Gene3D G3DSA:3.30.40.10 no description 3.9e-08 47-126
IPR013323 SIAH-type domain
Molecular Function GO:0004842 ubiquitin-protein ligase activity    
Molecular Function GO:0008270 zinc ion binding    
Biological Process GO:0016567 protein ubiquitination    
Gene3D G3DSA:3.90.890.10 no description 3.7e-20 127-169
IPR018121 Seven-in-absentia protein, TRAF-like domain
Cellular Component GO:0005634 nucleus    
Biological Process GO:0006511 ubiquitin-dependent protein catabolic process    
Biological Process GO:0007275 multicellular organismal development    
HMMPfam PF03145 Sina 3.1e-73 103-302
no_ID  
Gene3D G3DSA:2.60.210.10 no description 7e-54 179-306
superfamily SSF57850 RING/U-box 2.1e-07 53-109
Wolf-PSORT
Lj1g3v4372170.1	nucl 5, cyto 4, extr 3, cysk_nucl 3
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj1g3v4372170.1