Miyakogusa Predicted Gene

Lj1g3v3960360.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr1
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL G7IUI0_MEDTR 199 66.2 75.4 (tr|G7IUI0) Polygalacturonase OS=Medicago truncatula GN=MTR_2g100040 PE=3 SV=1
TAIR_pep AT3G07820.1 128 43.1 67.2 | Symbols: | Pectin lyase-like superfamily protein | chr3:2496597-2498028 REVERSE LENGTH=391
Medicago Medtr2g100040.1 199 66.2 75.4 | polygalacturonase | LC | chr2:42942787-42944494 | 20130731
Soybean Glyma02g47720.1 168 62.9 72.6  
LJGI --No_Hits--        
A list of protein families, domains and functional sites (searches in InterPro)
Lj1g3v3960360.1 length: 149 aa.
IPR000743 Glycoside hydrolase, family 28
method AccNumber shortName E-value location
Molecular Function GO:0004650 polygalacturonase activity    
Biological Process GO:0005975 carbohydrate metabolic process    
HMMPfam PF00295 Glyco_hydro_28 8e-20 49-142
IPR011050 Pectin lyase fold/virulence factor
superfamily SSF51126 Pectin 1.8e-21 2-128
IPR012334 Pectin lyase fold
Gene3D G3DSA:2.160.20.10 no description 2.9e-23 7-136
no_ID  
HMMPanther PTHR31375 FAMILY 4.9e-43 1-143
HMMPanther PTHR31375:SF0 SUBFAMILY 4.9e-43 1-143
Putative transmembrane regions
  From To
TM segments
SOSUI		 1 23
Wolf-PSORT
Lj1g3v3960360.1	chlo 14
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj1g3v3960360.1