Miyakogusa Predicted Gene

Lj1g3v3948260.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr1
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I1ML41_SOYBN 632 72.6 77.4 (tr|I1ML41) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep AT1G09230.1 453 55.5 67.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr1:2979637-2982563 REVERSE LENGTH=442
Medicago Medtr7g085290.1 614 72.1 75.8 | RNA recognition motif, a.k.a. RRM, RBD protein | HC | chr7:33006796-33014305 | 20130731
Soybean Glyma16g04710.1 632 72.6 77.4  
LJGI gnl|LJGI|TC58563 1354 100.0 100.0 similar to UniRef100_A7QHK3 Cluster: Chromosome chr5 scaffold_98, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr5 scaffold_98, whole genome shotgun sequence - Vitis vinifera (Grape), partial (56%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj1g3v3948260.1 length: 445 aa.
IPR000504 RNA recognition motif domain
method AccNumber shortName E-value location
Molecular Function GO:0003676 nucleic acid binding    
HMMPfam PF00076 RRM_1 9.6e-09 24-89
360-432
HMMSmart SM00360 RNA 9.5e-10 23-92
359-436
ProfileScan PS50102 RRM 13.840 22-96
358-440
IPR012677 Nucleotide-binding, alpha-beta plait
Molecular Function GO:0000166 nucleotide binding    
Gene3D G3DSA:3.30.70.330 no description 2e-14 16-98
352-440
no_ID  
HMMPanther PTHR16105 UNCHARACTERIZED 1.4e-111 1-445
HMMPanther PTHR16105:SF0 SUBFAMILY 1.4e-111 1-445
Seg seg seg NA 110-124
199-221
227-244
superfamily SSF54928 RNA-binding 2.5e-17 20-445
Wolf-PSORT
Lj1g3v3948260.1	nucl 7, cyto 3, chlo 1, plas 1, cysk 1, golg 1, golg_plas 1, cysk_plas 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj1g3v3948260.1