Miyakogusa Predicted Gene
- Lj1g3v3918170.2
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr1
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
K7KH31_SOYBN |
690 |
80.5 |
84.8 |
(tr|K7KH31) Uncharacterized protein OS=Glycine max PE=3 SV=1 |
| TAIR_pep |
AT4G01040.1 |
555 |
62.4 |
76.0 |
| Symbols: | Glycosyl hydrolase superfamily protein | chr4:453383-455407 FORWARD LENGTH=430 |
| Medicago |
Medtr5g025480.1 |
694 |
78.5 |
86.0 |
| glycoside hydrolase family 18 protein | HC | chr5:10343436-10348547 | 20130731 |
| Soybean |
Glyma03g41760.1 |
685 |
80.1 |
84.4 |
|
| LJGI |
gnl|LJGI|BW622754 |
819 |
100.0 |
100.0 |
similar to UniRef100_A7PZU1 Cluster: Chromosome chr15 scaffold_40, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr15 scaffold_40, whole genome shotgun sequence - Vitis vinifera (Grape), partial (17%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj1g3v3918170.2 |
length: 433 aa. |
| IPR001223 |
Glycoside hydrolase, family 18, catalytic domain |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0004553 |
hydrolase activity, hydrolyzing O-glycosyl compounds |
|
|
| Biological Process |
GO:0005975 |
carbohydrate metabolic process |
|
|
| HMMPfam |
PF00704 |
Glyco_hydro_18 |
4.1e-15 |
107-424 |
| IPR011583 |
Chitinase II |
| Molecular Function |
GO:0004568 |
chitinase activity |
|
|
| Biological Process |
GO:0006032 |
chitin catabolic process |
|
|
| HMMSmart |
SM00636 |
no description |
3.8e-07 |
105-425 |
| IPR013781 |
Glycoside hydrolase, catalytic domain |
| Molecular Function |
GO:0003824 |
catalytic activity |
|
|
| Biological Process |
GO:0005975 |
carbohydrate metabolic process |
|
|
| Gene3D |
G3DSA:3.20.20.80 |
no description |
2.4e-22 |
107-424 |
| IPR017853 |
Glycoside hydrolase, superfamily |
| superfamily |
SSF51445 |
(Trans)glycosidases |
1.5e-30 |
105-433 |
| no_ID |
|
| HMMPanther |
PTHR11177 |
CHITINASE |
2.2e-109 |
69-433 |
| Seg |
seg |
seg |
NA |
312-320 |
- Putative transmembrane regions
| |
From |
To |
TM segments
SOSUI |
39 |
61 |
- Wolf-PSORT
Lj1g3v3918170.2 cyto 4.5, cyto_nucl 4.5, nucl 3.5, plas 2, E.R. 2, golg 2, golg_plas 2, E.R._plas 2
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj1g3v3918170.2 |
|