Miyakogusa Predicted Gene

Lj1g3v3904270.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr1
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL G7KX86_MEDTR 1422 82.4 90.5 (tr|G7KX86) Pentatricopeptide repeat-containing protein OS=Medicago truncatula GN=MTR_7g083940 PE=4 SV=1
TAIR_pep AT3G02010.1 1013 58.7 75.0 | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr3:337965-340442 FORWARD LENGTH=825
Medicago Medtr7g076020.1 553 36.2 58.0 | pentatricopeptide (PPR) repeat protein | HC | chr7:28566228-28568873 | 20130731
Soybean Glyma19g27520.1 1347 80.6 88.1  
LJGI --No_Hits--        
A list of protein families, domains and functional sites (searches in InterPro)
Lj1g3v3904270.1 length: 819 aa.
IPR002885 Pentatricopeptide repeat
method AccNumber shortName E-value location
HMMPfam PF01535 PPR 0.012 79-107
181-207
283-307
311-337
412-440
485-510
586-609
HMMPfam PF13041 PPR_2 3.7e-09 107-153
207-252
511-558
HMMTigr TIGR00756 PPR: 0.00067 80-107
109-142
180-206
210-244
311-337
414-445
486-510
513-547
586-609
ProfileScan PS51375 PPR 5.514 107-141
76-106
45-75
208-242
177-207
142-176
309-343
278-308
410-444
379-409
511-545
480-510
445-479
546-576
582-612
649-683
695-730
IPR011990 Tetratricopeptide-like helical
Molecular Function GO:0005515 protein binding    
Gene3D G3DSA:1.25.40.10 no description 2e-10 589-667
no_ID  
Coil coil coiled-coil NA 709-730
HMMPanther PTHR24015 FAMILY 0 61-819
HMMPanther PTHR24015:SF169PENTATRICOPEPTIDE (PPR) 0 61-819
HMMPfam PF14432 DYW_deaminase 4e-14 697-809
Seg seg seg NA 711-725
Wolf-PSORT
Lj1g3v3904270.1	mito 5, nucl 4, pero 3, chlo 2, cyto_nucl 2, cysk_nucl 2, nucl_plas 2
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj1g3v3904270.1