Miyakogusa Predicted Gene

Lj1g3v3407680.1

Related links:

Predicted Sequence Links:

Genome Sequence: Lj3.0_chr1

Full length sequence(62285374 bp) Sequence Cut

Init: Term:
reverse complement

Results of Blast2 searches (The best-hits are tabulated.):

database Accession Score Iden
(%) Posi
(%) Definition

TrEMBL I1K775_SOYBN 684 76.2 83.3 (tr|I1K775) Uncharacterized protein OS=Glycine max PE=3 SV=1

TAIR_pep AT4G34480.1 581 67.1 76.9 | Symbols: | O-Glycosyl hydrolases family 17 protein | chr4:16481147-16483988 REVERSE LENGTH=504

Medicago Medtr3g116510.3 672 73.4 82.0 | glucan endo-1,3-beta-glucosidase-like protein | HC | chr3:54507336-54501777 | 20130731

Soybean Glyma06g01500.2 684 76.2 83.3

LJGI gnl|LJGI|TC58126 2605 100.0 100.0 weakly similar to UniRef100_Q94G86 Cluster: Beta-1,3-glucanase-like protein; n=1; Olea europaea|Rep: Beta-1,3-glucanase-like protein - Olea europaea (Common olive), partial (83%)

A list of protein families, domains and functional sites (searches in InterPro)

Lj1g3v3407680.1 length: 491 aa.

IPR000490 Glycoside hydrolase, family 17

method AccNumber shortName E-value location

Molecular Function GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds

Biological Process GO:0005975 carbohydrate metabolic process

HMMPfam PF00332 Glyco_hydro_17 1.5e-93 60-377

PatternScan PS00587 GLYCOSYL_HYDROL_F17 NA 292-305

IPR012946 X8

HMMPfam PF07983 X8 1.8e-19 401-471

HMMSmart SM00768 Possibly 1.1e-47 400-485

IPR013781 Glycoside hydrolase, catalytic domain

Molecular Function GO:0003824 catalytic activity

Biological Process GO:0005975 carbohydrate metabolic process

Gene3D G3DSA:3.20.20.80 no description 1.6e-121 60-378

IPR017853 Glycoside hydrolase, superfamily

superfamily SSF51445 (Trans)glycosidases 5e-98 60-379

no_ID

HMMPanther PTHR32227 FAMILY 4.5e-235 24-485

HMMPanther PTHR32227:SF18 SUBFAMILY 4.5e-235 24-485

Seg seg seg NA 17-48
101-116
382-400

Putative transmembrane regions

From To

TM segments
SOSUI 1 23

31 53

Wolf-PSORT

Lj1g3v3407680.1 chlo 9, E.R. 2, golg 2

PTS1 (Peroxisome targeting signal type 1)

entry_id prediction score sppta spptna fp profile

Lj1g3v3407680.1

Top Kazusa DNA Research Institute

database	Accession	Score	Iden (%)	Posi (%)	Definition
TrEMBL	I1K775_SOYBN	684	76.2	83.3	(tr\|I1K775) Uncharacterized protein OS=Glycine max PE=3 SV=1
TAIR_pep	AT4G34480.1	581	67.1	76.9	\| Symbols: \| O-Glycosyl hydrolases family 17 protein \| chr4:16481147-16483988 REVERSE LENGTH=504
Medicago	Medtr3g116510.3	672	73.4	82.0	\| glucan endo-1,3-beta-glucosidase-like protein \| HC \| chr3:54507336-54501777 \| 20130731
Soybean	Glyma06g01500.2	684	76.2	83.3
LJGI	gnl\|LJGI\|TC58126	2605	100.0	100.0	weakly similar to UniRef100_Q94G86 Cluster: Beta-1,3-glucanase-like protein; n=1; Olea europaea\|Rep: Beta-1,3-glucanase-like protein - Olea europaea (Common olive), partial (83%)

IPR000490	Glycoside hydrolase, family 17
Lj1g3v3407680.1				length: 491 aa.
method	AccNumber	shortName	E-value	location
Molecular Function	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds
Biological Process	GO:0005975	carbohydrate metabolic process
HMMPfam	PF00332	Glyco_hydro_17	1.5e-93	60-377
PatternScan	PS00587	GLYCOSYL_HYDROL_F17	NA	292-305
IPR012946	X8
HMMPfam	PF07983	X8	1.8e-19	401-471
HMMSmart	SM00768	Possibly	1.1e-47	400-485
IPR013781	Glycoside hydrolase, catalytic domain
Molecular Function	GO:0003824	catalytic activity
Biological Process	GO:0005975	carbohydrate metabolic process
Gene3D	G3DSA:3.20.20.80	no description	1.6e-121	60-378
IPR017853	Glycoside hydrolase, superfamily
superfamily	SSF51445	(Trans)glycosidases	5e-98	60-379
no_ID
HMMPanther	PTHR32227	FAMILY	4.5e-235	24-485
HMMPanther	PTHR32227:SF18	SUBFAMILY	4.5e-235	24-485
Seg	seg	seg	NA	17-48 101-116 382-400