Miyakogusa Predicted Gene

Lj1g3v3328940.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr1
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL B9GMU1_POPTR 1129 78.6 87.0 (tr|B9GMU1) Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_708845 PE=3 SV=1
TAIR_pep AT1G29880.1 1078 76.4 86.5 | Symbols: | glycyl-tRNA synthetase / glycine--tRNA ligase | chr1:10459662-10462781 REVERSE LENGTH=729
Medicago Medtr7g406850.1 1164 81.7 88.2 | glycyl-tRNA synthetase/glycine-tRNA ligase | HC | chr7:942169-936679 | 20130731
Soybean Glyma08g47890.1 1128 79.6 87.3  
LJGI gnl|LJGI|TC58583 1929 99.2 99.2 similar to UniRef100_O23627 Cluster: Glycyl-tRNA synthetase 1, mitochondrial precursor; n=3; Arabidopsis thaliana|Rep: Glycyl-tRNA synthetase 1, mitochondrial precursor - Arabidopsis thaliana (Mouse-ear cress), partial (40%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj1g3v3328940.1 length: 722 aa.
IPR000738 WHEP-TRS
method AccNumber shortName E-value location
Molecular Function GO:0004812 aminoacyl-tRNA ligase activity    
Molecular Function GO:0005524 ATP binding    
Biological Process GO:0006418 tRNA aminoacylation for protein translation    
HMMPfam PF00458 WHEP-TRS 3e-09 53-89
HMMSmart SM00991 no description 6.3e-07 51-107
ProfileScan PS51185 WHEP_TRS_2 10.789 47-103
IPR002314 Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved domain
Molecular Function GO:0000166 nucleotide binding    
Molecular Function GO:0004812 aminoacyl-tRNA ligase activity    
Molecular Function GO:0005524 ATP binding    
Cellular Component GO:0005737 cytoplasm    
Biological Process GO:0006418 tRNA aminoacylation for protein translation    
HMMPfam PF00587 tRNA-synt_2b 1.9e-62 147-441
IPR002315 Glycyl-tRNA synthetase, alpha2 dimer
Molecular Function GO:0000166 nucleotide binding    
Molecular Function GO:0004820 glycine-tRNA ligase activity    
Molecular Function GO:0005524 ATP binding    
Cellular Component GO:0005737 cytoplasm    
Biological Process GO:0006426 glycyl-tRNA aminoacylation    
FPrintScan PR01043 TRNASYNTHGLY 6e-58 129-143
266-278
285-302
317-334
334-344
564-576
649-668
HMMTigr TIGR00389 glyS_dimeric: 5e-207 112-698
IPR004154 Anticodon-binding
Gene3D G3DSA:3.40.50.800 no description 1.5e-31 602-714
HMMPfam PF03129 HGTP_anticodon 1.7e-17 610-698
superfamily SSF52954 Class 6.1e-28 597-715
IPR006195 Aminoacyl-tRNA synthetase, class II
Molecular Function GO:0004812 aminoacyl-tRNA ligase activity    
Biological Process GO:0006418 tRNA aminoacylation for protein translation    
ProfileScan PS50862 AA_TRNA_LIGASE_II 11.949 248-589
IPR009068 S15/NS1, RNA-binding
Gene3D G3DSA:1.10.287.10 no description 6.9e-08 53-87
superfamily SSF47060 S15/NS1 2.8e-07 50-105
IPR027031 Glycyl-tRNA synthetase/DNA polymerase subunit gamma-2
HMMPanther PTHR10745 GLYCYL-TRNA 0 44-722
no_ID  
Gene3D G3DSA:3.30.930.10 no description 1.5e-128 553-583
HMMPanther PTHR10745:SF0 GLYCYL-TRNA 0 44-722
Seg seg seg NA 16-44
61-85
superfamily SSF55681 Class 1.2e-117 106-613
Wolf-PSORT
Lj1g3v3328940.1	mito 10.5, chlo_mito 7.5, chlo 3.5
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj1g3v3328940.1