Miyakogusa Predicted Gene

Lj1g3v2628740.3
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr1
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL G7L3J8_MEDTR 852 94.5 97.5 (tr|G7L3J8) DEAD-box ATP-dependent RNA helicase OS=Medicago truncatula GN=MTR_7g076800 PE=3 SV=1
TAIR_pep AT4G00660.1 816 90.3 94.9 | Symbols: RH8, ATRH8 | RNAhelicase-like 8 | chr4:274638-277438 FORWARD LENGTH=505
Medicago Medtr7g076800.1 852 94.5 97.5 | DEAD-box ATP-dependent RNA helicase-like protein | HC | chr7:28977519-28970435 | 20130731
Soybean Glyma07g07950.1 838 93.8 96.1  
LJGI gnl|LJGI|TC75782 1195 100.0 100.0 homologue to UniRef100_A7QIS9 Cluster: Chromosome chr2 scaffold_105, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr2 scaffold_105, whole genome shotgun sequence - Vitis vinifera (Grape), partial (42%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj1g3v2628740.3 length: 521 aa.
IPR000629 RNA helicase, ATP-dependent, DEAD-box, conserved site
method AccNumber shortName E-value location
Molecular Function GO:0003676 nucleic acid binding    
Molecular Function GO:0005524 ATP binding    
Molecular Function GO:0008026 ATP-dependent helicase activity    
PatternScan PS00039 DEAD_ATP_HELICASE NA 294-302
IPR001650 Helicase, C-terminal
Molecular Function GO:0003676 nucleic acid binding    
Molecular Function GO:0004386 helicase activity    
Molecular Function GO:0005524 ATP binding    
HMMPfam PF00271 Helicase_C 9.7e-25 404-479
HMMSmart SM00490 helicase 1.5e-30 398-479
ProfileScan PS51194 HELICASE_CTER 24.013 358-518
IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal
Molecular Function GO:0003676 nucleic acid binding    
Molecular Function GO:0005524 ATP binding    
Molecular Function GO:0008026 ATP-dependent helicase activity    
HMMPfam PF00270 DEAD 3.6e-43 172-336
IPR014001 Helicase, superfamily 1/2, ATP-binding domain
HMMSmart SM00487 DEAD-like 3.9e-56 166-362
ProfileScan PS51192 HELICASE_ATP_BIND_1 28.661 178-348
IPR014014 RNA helicase, DEAD-box type, Q motif
ProfileScan PS51195 Q_MOTIF 10.185 147-175
IPR027417 P-loop containing nucleoside triphosphate hydrolase
superfamily SSF52540 P-loop 1.7e-71 214-502
no_ID  
Gene3D G3DSA:3.40.50.300 no description 5.4e-49 137-351
354-516
HMMPanther PTHR24031 FAMILY 0 1-519
HMMPanther PTHR24031:SF76 SUBFAMILY 0 1-519
Seg seg seg NA 10-33
35-52
56-89
Wolf-PSORT
Lj1g3v2628740.3	nucl 4, mito 4, chlo 3, cyto_nucl 3
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj1g3v2628740.3